RNA–Protein interactions for RNA: YDL230W

PTP1, Transcript of Phosphotyrosine-specific protein phosphatase, yeast

Gene PTP1, Length 1,008 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PTP1	YDL230W	JNM1	P36224	373 aa		13.42	□□□□□ -0.26
PTP1	YDL230W	RPN3	P40016	523 aa	Known RBP	13.42	□□□□□ -0.26
PTP1	YDL230W	RPO26	P20435	155 aa		13.41	□□□□□ -0.26
PTP1	YDL230W	CKI1	P20485	582 aa		13.41	□□□□□ -0.26
PTP1	YDL230W	SUV3	P32580	737 aa		13.41	□□□□□ -0.26
PTP1	YDL230W	KIC1	P38692	1080 aa		13.41	□□□□□ -0.26
PTP1	YDL230W	YJL007C	P47080	104 aa		13.41	□□□□□ -0.26
PTP1	YDL230W	CNM67	P53865	581 aa	Known RBP	13.41	□□□□□ -0.26
PTP1	YDL230W	YPR078C	Q06813	372 aa		13.41	□□□□□ -0.26
PTP1	YDL230W	HXT1	P32465	570 aa		13.4	□□□□□ -0.26
PTP1	YDL230W	SHP1	P34223	423 aa		13.4	□□□□□ -0.26
PTP1	YDL230W	RRP1	P35178	278 aa	Predicted RBP	13.4	□□□□□ -0.26
PTP1	YDL230W	YKL023W	P36103	277 aa	Known RBP	13.4	□□□□□ -0.26
PTP1	YDL230W	GIR2	Q03768	265 aa	Predicted RBP	13.4	□□□□□ -0.26
PTP1	YDL230W	UTP13	Q05946	817 aa	Known RBP	13.4	□□□□□ -0.26
PTP1	YDL230W	UBX5	Q06682	500 aa		13.4	□□□□□ -0.26
PTP1	YDL230W	SUB2	Q07478	446 aa	Known RBP	13.4	□□□□□ -0.26
PTP1	YDL230W	OSH2	Q12451	1283 aa		13.4	□□□□□ -0.26
PTP1	YDL230W	RTG2	P32608	588 aa	Known RBP	13.39	□□□□□ -0.27
PTP1	YDL230W	KTR2	P33550	425 aa		13.39	□□□□□ -0.27
PTP1	YDL230W	FIS1	P40515	155 aa		13.39	□□□□□ -0.27
PTP1	YDL230W	SPH1	Q06160	661 aa		13.39	□□□□□ -0.27
PTP1	YDL230W	PGK1	P00560	416 aa	Known RBP	13.38	□□□□□ -0.27
PTP1	YDL230W	PCK1	P10963	549 aa		13.38	□□□□□ -0.27
PTP1	YDL230W	YMR114C	Q04471	368 aa	Known RBP	13.38	□□□□□ -0.27
PTP1	YDL230W	DUS3	Q06053	668 aa	Known RBP	13.38	□□□□□ -0.27
PTP1	YDL230W	DAS2	Q12084	232 aa		13.38	□□□□□ -0.27
PTP1	YDL230W	NCR1	Q12200	1170 aa		13.38	□□□□□ -0.27
PTP1	YDL230W	GIN4	Q12263	1142 aa		13.38	□□□□□ -0.27
PTP1	YDL230W	GFA1	P14742	717 aa	Known RBP	13.37	□□□□□ -0.27
PTP1	YDL230W	YDJ1	P25491	409 aa	Known RBP	13.37	□□□□□ -0.27
PTP1	YDL230W	BYE1	P36106	594 aa		13.37	□□□□□ -0.27
PTP1	YDL230W	ERC1	P38767	581 aa		13.37	□□□□□ -0.27
PTP1	YDL230W	LCB2	P40970	561 aa		13.37	□□□□□ -0.27
PTP1	YDL230W	VID30	P53076	958 aa		13.37	□□□□□ -0.27
PTP1	YDL230W	NCS2	P53923	493 aa	Predicted RBP	13.37	□□□□□ -0.27
PTP1	YDL230W	PHM6	Q05637	104 aa		13.37	□□□□□ -0.27
PTP1	YDL230W	YLR297W	Q05899	129 aa		13.37	□□□□□ -0.27
PTP1	YDL230W	CRD1	Q07560	283 aa		13.37	□□□□□ -0.27
PTP1	YDL230W	GUD1	Q07729	489 aa		13.37	□□□□□ -0.27
PTP1	YDL230W	MLH2	Q07980	695 aa		13.37	□□□□□ -0.27
PTP1	YDL230W	PHO8	P11491	566 aa		13.36	□□□□□ -0.27
PTP1	YDL230W	SMC3	P47037	1230 aa		13.36	□□□□□ -0.27
PTP1	YDL230W	PTA1	Q01329	785 aa	Predicted RBP	13.36	□□□□□ -0.27
PTP1	YDL230W	DIG1	Q03063	452 aa	Known RBP	13.36	□□□□□ -0.27
PTP1	YDL230W	UTP14	Q04500	899 aa	Known RBP	13.36	□□□□□ -0.27
PTP1	YDL230W	ERG11	P10614	530 aa		13.35	□□□□□ -0.27
PTP1	YDL230W	MCD4	P36051	919 aa		13.35	□□□□□ -0.27
PTP1	YDL230W	UBP13	P38187	747 aa		13.35	□□□□□ -0.27
PTP1	YDL230W	PNT1	P38969	423 aa		13.35	□□□□□ -0.27
PTP1	YDL230W	SAP1	P39955	897 aa	Known RBP	13.35	□□□□□ -0.27
PTP1	YDL230W	MVP1	P40959	511 aa	Known RBP	13.35	□□□□□ -0.27
PTP1	YDL230W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	13.35	□□□□□ -0.27	not detected
PTP1	YDL230W	RMP1	Q12530	201 aa		13.35	□□□□□ -0.27
PTP1	YDL230W	CHS2	P14180	963 aa		13.34	□□□□□ -0.27
PTP1	YDL230W	CLB5	P30283	435 aa		13.34	□□□□□ -0.27
PTP1	YDL230W	OCT1	P35999	772 aa		13.34	□□□□□ -0.27
PTP1	YDL230W	MCR1	P36060	302 aa	Known RBP	13.34	□□□□□ -0.27
PTP1	YDL230W	CWC22	P53333	577 aa	Known RBP	13.34	□□□□□ -0.27
PTP1	YDL230W	GYL1	Q04322	720 aa		13.34	□□□□□ -0.27
PTP1	YDL230W	POB3	Q04636	552 aa	Known RBP	13.34	□□□□□ -0.27
PTP1	YDL230W	CSR1	Q06705	408 aa	Known RBP	13.34	□□□□□ -0.27
PTP1	YDL230W	TRP2	P00899	507 aa	Known RBP	13.33	□□□□□ -0.28
PTP1	YDL230W	SWI6	P09959	803 aa		13.33	□□□□□ -0.28
PTP1	YDL230W	DBP5	P20449	482 aa	Known RBP	13.33	□□□□□ -0.28
PTP1	YDL230W	PER1	P25625	357 aa		13.33	□□□□□ -0.28
PTP1	YDL230W	UTR4	P32626	227 aa		13.33	□□□□□ -0.28
PTP1	YDL230W	MIC19	P43594	170 aa		13.33	□□□□□ -0.28
PTP1	YDL230W	BTN2	P53286	410 aa		13.33	□□□□□ -0.28
PTP1	YDL230W	TIM8	P57744	87 aa		13.33	□□□□□ -0.28
PTP1	YDL230W	TCP1	P12612	559 aa	Known RBP	13.32	□□□□□ -0.28
PTP1	YDL230W	CDC48	P25694	835 aa	Known RBP	13.32	□□□□□ -0.28
PTP1	YDL230W	YSC83	P32792	385 aa		13.32	□□□□□ -0.28
PTP1	YDL230W	SDS3	P40505	327 aa		13.32	□□□□□ -0.28
PTP1	YDL230W	SVF1	Q05515	481 aa		13.32	□□□□□ -0.28
PTP1	YDL230W	CUR1	Q06469	252 aa		13.32	□□□□□ -0.28
PTP1	YDL230W	CNS1	P33313	385 aa		13.31	□□□□□ -0.28
PTP1	YDL230W	FIG4	P42837	879 aa		13.31	□□□□□ -0.28
PTP1	YDL230W	ZPR1	P53303	486 aa	Known RBP	13.31	□□□□□ -0.28
PTP1	YDL230W	URH1	Q04179	340 aa		13.31	□□□□□ -0.28
PTP1	YDL230W	PTC4	P38089	393 aa		13.3	□□□□□ -0.28
PTP1	YDL230W	AVT1	P47082	602 aa		13.3	□□□□□ -0.28
PTP1	YDL230W	COS5	P47187	383 aa		13.3	□□□□□ -0.28
PTP1	YDL230W	KAP114	P53067	1004 aa		13.3	□□□□□ -0.28
PTP1	YDL230W	NOP6	Q07623	225 aa	Known RBP	13.3	□□□□□ -0.28
PTP1	YDL230W	RLP24	Q07915	199 aa	Known RBP	13.3	□□□□□ -0.28
PTP1	YDL230W	SLX4	Q12098	748 aa		13.3	□□□□□ -0.28
PTP1	YDL230W	NAM7	P30771	971 aa	Known RBP	13.29	□□□□□ -0.28
PTP1	YDL230W	ECM32	P32644	1121 aa	Known RBP	13.29	□□□□□ -0.28
PTP1	YDL230W	HXT8	P40886	569 aa		13.29	□□□□□ -0.28
PTP1	YDL230W	HUL5	P53119	910 aa		13.29	□□□□□ -0.28
PTP1	YDL230W	YGR021W	P53212	290 aa		13.29	□□□□□ -0.28
PTP1	YDL230W	TAM41	P53230	385 aa		13.29	□□□□□ -0.28
PTP1	YDL230W	YML082W	Q04533	649 aa	Known RBP	13.29	□□□□□ -0.28
PTP1	YDL230W	TSR1	Q07381	788 aa	Known RBP	13.29	□□□□□ -0.28
PTP1	YDL230W	ISA1	Q07821	250 aa	Predicted RBP	13.29	□□□□□ -0.28
PTP1	YDL230W	NUR1	Q12066	484 aa		13.29	□□□□□ -0.28
PTP1	YDL230W	SPT2	P06843	333 aa	Predicted RBP	13.28	□□□□□ -0.28
PTP1	YDL230W	ATG19	P35193	415 aa		13.28	□□□□□ -0.28
PTP1	YDL230W	YKL050C	P35736	922 aa		13.28	□□□□□ -0.28

Retrieved 100 of 5,963 RNA–protein pairs in 59.8 ms