RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC9	YDL164C	PET309	P32522	965 aa	Predicted RBP	4.94	□□□□□ -1.62
CDC9	YDL164C	VMA8	P32610	256 aa	Known RBP	4.94	□□□□□ -1.62
CDC9	YDL164C	RIM4	P38741	713 aa		4.94	□□□□□ -1.62
CDC9	YDL164C	CAF16	P43569	289 aa		4.94	□□□□□ -1.62
CDC9	YDL164C	HOS2	P53096	452 aa	Predicted RBP	4.94	□□□□□ -1.62
CDC9	YDL164C	PCL10	P53124	433 aa		4.94	□□□□□ -1.62
CDC9	YDL164C	ARC35	P53731	342 aa	Known RBP	4.94	□□□□□ -1.62
CDC9	YDL164C	CAF120	P53836	1060 aa		4.94	□□□□□ -1.62
CDC9	YDL164C	TIM10	P87108	93 aa		4.94	□□□□□ -1.62
CDC9	YDL164C	YLR352W	Q06479	807 aa		4.94	□□□□□ -1.62
CDC9	YDL164C	ATG33	Q06485	197 aa		4.94	□□□□□ -1.62
CDC9	YDL164C	RRP9	Q06506	573 aa	Known RBP	4.94	□□□□□ -1.62
CDC9	YDL164C	DPH6	Q12429	685 aa		4.94	□□□□□ -1.62
CDC9	YDL164C	HSP82	P02829	709 aa	Known RBP	4.93	□□□□□ -1.62
CDC9	YDL164C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.93	□□□□□ -1.62	not detected
CDC9	YDL164C	YER152C	P10356	443 aa		4.93	□□□□□ -1.62
CDC9	YDL164C	HMG1	P12683	1054 aa		4.93	□□□□□ -1.62
CDC9	YDL164C	YBL086C	P38177	466 aa		4.93	□□□□□ -1.62
CDC9	YDL164C	TDA9	Q04545	1251 aa		4.93	□□□□□ -1.62
CDC9	YDL164C	TSR2	Q06672	205 aa	Known RBP	4.93	□□□□□ -1.62
CDC9	YDL164C	YPL191C	Q08930	360 aa		4.93	□□□□□ -1.62
CDC9	YDL164C	TY1A-DR3	Q12441	440 aa		4.93	□□□□□ -1.62
CDC9	YDL164C	DBP2	P24783	546 aa	Known RBP	4.93	□□□□□ -1.62
CDC9	YDL164C	PAT1	P25644	796 aa	Known RBP	4.93	□□□□□ -1.62
CDC9	YDL164C	VPH1	P32563	840 aa	Known RBP	4.93	□□□□□ -1.62
CDC9	YDL164C	KAP122	P32767	1081 aa		4.93	□□□□□ -1.62
CDC9	YDL164C	PIN4	P34217	668 aa	Known RBP RIP-Chip data	4.93	□□□□□ -1.62	not detected
CDC9	YDL164C	JNM1	P36224	373 aa		4.93	□□□□□ -1.62
CDC9	YDL164C	SHM2	P37291	469 aa	Known RBP	4.93	□□□□□ -1.62
CDC9	YDL164C	VRP1	P37370	817 aa		4.93	□□□□□ -1.62
CDC9	YDL164C	YBR238C	P38330	731 aa	Known RBP	4.93	□□□□□ -1.62
CDC9	YDL164C	AIM46	P38885	310 aa		4.93	□□□□□ -1.62
CDC9	YDL164C	SIT1	P39980	628 aa		4.93	□□□□□ -1.62
CDC9	YDL164C	TMA108	P40462	946 aa		4.93	□□□□□ -1.62
CDC9	YDL164C	DPH1	P40487	425 aa	Known RBP	4.93	□□□□□ -1.62
CDC9	YDL164C	ALG2	P43636	503 aa		4.93	□□□□□ -1.62
CDC9	YDL164C	GUS1	P46655	708 aa	Known RBP RIP-Chip data	4.93	□□□□□ -1.62	not detected
CDC9	YDL164C	MNN11	P46985	422 aa	Known RBP	4.93	□□□□□ -1.62
CDC9	YDL164C	RRT6	P53117	311 aa	Predicted RBP	4.93	□□□□□ -1.62
CDC9	YDL164C	RSC58	Q07979	502 aa		4.93	□□□□□ -1.62
CDC9	YDL164C	PGC1	Q08959	321 aa		4.93	□□□□□ -1.62
CDC9	YDL164C	RKM4	Q12504	494 aa		4.93	□□□□□ -1.62
CDC9	YDL164C	ILS1	P09436	1072 aa	Known RBP	4.92	□□□□□ -1.62
CDC9	YDL164C	MSM1	P22438	575 aa		4.92	□□□□□ -1.62
CDC9	YDL164C	MKS1	P34072	584 aa		4.92	□□□□□ -1.62
CDC9	YDL164C	YEL1	P34225	687 aa		4.92	□□□□□ -1.62
CDC9	YDL164C	NSE5	Q03718	556 aa		4.92	□□□□□ -1.62
CDC9	YDL164C	GYP1	Q08484	637 aa		4.92	□□□□□ -1.62
CDC9	YDL164C	NPP1	P25353	742 aa		4.92	□□□□□ -1.62
CDC9	YDL164C	AAD3	P25612	363 aa		4.92	□□□□□ -1.62
CDC9	YDL164C	BRF1	P29056	596 aa		4.92	□□□□□ -1.62
CDC9	YDL164C	RAD16	P31244	790 aa		4.92	□□□□□ -1.62
CDC9	YDL164C	SCT1	P32784	759 aa		4.92	□□□□□ -1.62
CDC9	YDL164C	ROG3	P43602	733 aa		4.92	□□□□□ -1.62
CDC9	YDL164C	YNR040W	P53736	256 aa		4.92	□□□□□ -1.62
CDC9	YDL164C	YKU80	Q04437	629 aa		4.92	□□□□□ -1.62
CDC9	YDL164C	DFG5	Q05031	458 aa		4.92	□□□□□ -1.62
CDC9	YDL164C	IDI1	P15496	288 aa		4.91	□□□□□ -1.62
CDC9	YDL164C	KRR1	P25586	316 aa	Predicted RBP	4.91	□□□□□ -1.62
CDC9	YDL164C	SYP1	P25623	870 aa	Known RBP	4.91	□□□□□ -1.62
CDC9	YDL164C	YKL107W	P34251	309 aa		4.91	□□□□□ -1.62
CDC9	YDL164C	SQT1	P35184	431 aa		4.91	□□□□□ -1.62
CDC9	YDL164C	FAT1	P38225	669 aa		4.91	□□□□□ -1.62
CDC9	YDL164C	GPD2	P41911	440 aa	Known RBP	4.91	□□□□□ -1.62
CDC9	YDL164C	RET2	P43621	546 aa		4.91	□□□□□ -1.62
CDC9	YDL164C	ARE2	P53629	642 aa	Known RBP	4.91	□□□□□ -1.62
CDC9	YDL164C	SRP1	Q02821	542 aa	Known RBP	4.91	□□□□□ -1.62
CDC9	YDL164C	RSC3	Q06639	885 aa		4.91	□□□□□ -1.62
CDC9	YDL164C	PMT7	Q06644	662 aa		4.91	□□□□□ -1.62
CDC9	YDL164C	PFK1	P16861	987 aa	Known RBP	4.9	□□□□□ -1.62
CDC9	YDL164C	COX11	P19516	300 aa	Known RBP	4.9	□□□□□ -1.62
CDC9	YDL164C	MRT4	P33201	236 aa	Known RBP	4.9	□□□□□ -1.62
CDC9	YDL164C	TBS1	P38114	1094 aa		4.9	□□□□□ -1.62
CDC9	YDL164C	LRP1	P38801	184 aa	Known RBP	4.9	□□□□□ -1.62
CDC9	YDL164C	SPC72	P39723	622 aa		4.9	□□□□□ -1.62
CDC9	YDL164C	MAM1	P40065	302 aa		4.9	□□□□□ -1.62
CDC9	YDL164C	LSM5	P40089	93 aa	Known RBP	4.9	□□□□□ -1.62
CDC9	YDL164C	SBE2	P42223	864 aa	Known RBP	4.9	□□□□□ -1.62
CDC9	YDL164C	RMD8	P43620	662 aa		4.9	□□□□□ -1.62
CDC9	YDL164C	YGR283C	P53336	341 aa	Predicted RBP	4.9	□□□□□ -1.62
CDC9	YDL164C	CNM67	P53865	581 aa	Known RBP	4.9	□□□□□ -1.62
CDC9	YDL164C	DBP10	Q12389	995 aa	Known RBP	4.9	□□□□□ -1.62
CDC9	YDL164C	RPS21B	Q3E754	87 aa	Known RBP	4.9	□□□□□ -1.62
CDC9	YDL164C	NCP1	P16603	691 aa	Known RBP	4.9	□□□□□ -1.63
CDC9	YDL164C	RGP1	P16664	663 aa		4.9	□□□□□ -1.63
CDC9	YDL164C	DBP5	P20449	482 aa	Known RBP	4.9	□□□□□ -1.63
CDC9	YDL164C	CCR4	P31384	837 aa	Known RBP	4.9	□□□□□ -1.63
CDC9	YDL164C	PPH3	P32345	308 aa		4.9	□□□□□ -1.63
CDC9	YDL164C	CCT3	P39077	534 aa	Known RBP	4.9	□□□□□ -1.63
CDC9	YDL164C	IRC6	P43615	237 aa		4.9	□□□□□ -1.63
CDC9	YDL164C	ENT3	P47160	408 aa		4.9	□□□□□ -1.63
CDC9	YDL164C	HXT16	P47185	567 aa		4.9	□□□□□ -1.63
CDC9	YDL164C	TRM8	Q12009	286 aa		4.9	□□□□□ -1.63
CDC9	YDL164C	DED1	P06634	604 aa	Known RBP	4.89	□□□□□ -1.63
CDC9	YDL164C	SNF1	P06782	633 aa	Known RBP	4.89	□□□□□ -1.63
CDC9	YDL164C	SDH2	P21801	266 aa		4.89	□□□□□ -1.63
CDC9	YDL164C	SLA1	P32790	1244 aa		4.89	□□□□□ -1.63
CDC9	YDL164C	BCK2	P33306	851 aa		4.89	□□□□□ -1.63
CDC9	YDL164C	YKL151C	P36059	337 aa		4.89	□□□□□ -1.63
CDC9	YDL164C	AXL2	P38928	823 aa		4.89	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 23 ms