RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 PTK2Q05397 1052 aa8.3□□□□□ -1.08
VPS53-219ENST00000576019 LDLRAD1Q5T700 205 aa8.3□□□□□ -1.08
VPS53-219ENST00000576019 CCDC102BQ68D86 513 aa8.3□□□□□ -1.08
VPS53-219ENST00000576019 FAM161BQ96MY7 647 aa8.3□□□□□ -1.08
VPS53-219ENST00000576019 DOLKQ9UPQ8 538 aa8.3□□□□□ -1.08
VPS53-219ENST00000576019 TNS2Q63HR2 1409 aa8.29□□□□□ -1.08
VPS53-219ENST00000576019 PSME1Q06323 249 aa8.29□□□□□ -1.08
VPS53-219ENST00000576019 BLOC1S3Q6QNY0 202 aa8.29□□□□□ -1.08
VPS53-219ENST00000576019 ZNF662Q6ZS27 426 aa8.29□□□□□ -1.08
VPS53-219ENST00000576019 SAMD7Q7Z3H4 446 aa8.29□□□□□ -1.08
VPS53-219ENST00000576019 NT5DC4Q86YG4 428 aa8.29□□□□□ -1.08
VPS53-219ENST00000576019 BRPF3Q9ULD4 1205 aa8.29□□□□□ -1.08
VPS53-219ENST00000576019 SHANK3Q9BYB0 1731 aa8.29□□□□□ -1.08
VPS53-219ENST00000576019 PRDM15P57071 1507 aaPredicted RBP8.29□□□□□ -1.08
VPS53-219ENST00000576019 KIDINS220Q9ULH0 1771 aa8.28□□□□□ -1.08
VPS53-219ENST00000576019 NLRP1Q9C000 1473 aa8.28□□□□□ -1.08
VPS53-219ENST00000576019 MSH6P52701 1360 aa8.28□□□□□ -1.08
VPS53-219ENST00000576019 TK2O00142 265 aa8.28□□□□□ -1.08
VPS53-219ENST00000576019 BAG6P46379 1132 aa8.28□□□□□ -1.08
VPS53-219ENST00000576019 PSEN2P49810 448 aa8.28□□□□□ -1.08
VPS53-219ENST00000576019 KMT5BQ4FZB7 885 aa8.28□□□□□ -1.08
VPS53-219ENST00000576019 TMC7Q7Z402 723 aa8.28□□□□□ -1.08
VPS53-219ENST00000576019 DHX38Q92620 1227 aaKnown RBP8.28□□□□□ -1.08
VPS53-219ENST00000576019 CCDC85AQ96PX6 553 aaPredicted RBP8.28□□□□□ -1.08
VPS53-219ENST00000576019 PURBQ96QR8 312 aaKnown RBP8.28□□□□□ -1.08
VPS53-219ENST00000576019 HINFPQ9BQA5 517 aa8.28□□□□□ -1.08
VPS53-219ENST00000576019 TINF2Q9BSI4 451 aa8.28□□□□□ -1.08
VPS53-219ENST00000576019 ZBED2Q9BTP6 218 aa8.28□□□□□ -1.08
VPS53-219ENST00000576019 LNPKQ9C0E8 428 aa8.28□□□□□ -1.08
VPS53-219ENST00000576019 KDM5AP29375 1690 aaKnown RBP8.27□□□□□ -1.08
VPS53-219ENST00000576019 MCCD1P59942 119 aaPredicted RBP8.27□□□□□ -1.09
VPS53-219ENST00000576019 FKBP5Q13451 457 aaPredicted RBP8.27□□□□□ -1.09
VPS53-219ENST00000576019 DMRTA1Q5VZB9 504 aa8.27□□□□□ -1.09
VPS53-219ENST00000576019 ANKRD13DQ6ZTN6 518 aa8.27□□□□□ -1.09
VPS53-219ENST00000576019 TMEM87AQ8NBN3 555 aa8.27□□□□□ -1.09
VPS53-219ENST00000576019 USB1Q9BQ65 265 aaKnown RBP8.27□□□□□ -1.09
VPS53-219ENST00000576019 USP21Q9UK80 565 aa8.27□□□□□ -1.09
VPS53-219ENST00000576019 GPSM3Q9Y4H4 160 aa8.27□□□□□ -1.09
VPS53-219ENST00000576019 SETD5Q9C0A6 1442 aa8.27□□□□□ -1.09
VPS53-219ENST00000576019 PCNTO95613 3336 aa8.26□□□□□ -1.09
VPS53-219ENST00000576019 MMRN1Q13201 1228 aa8.26□□□□□ -1.09
VPS53-219ENST00000576019 PTPRNQ16849 979 aa8.26□□□□□ -1.09
VPS53-219ENST00000576019 PDXDC2PQ6P474 469 aa8.26□□□□□ -1.09
VPS53-219ENST00000576019 METTL16Q86W50 562 aaKnown RBP8.26□□□□□ -1.09
VPS53-219ENST00000576019 DNAJC5GQ8N7S2 189 aa8.26□□□□□ -1.09
VPS53-219ENST00000576019 GAS2L2Q8NHY3 880 aa8.26□□□□□ -1.09
VPS53-219ENST00000576019 ADAM32Q8TC27 787 aa8.26□□□□□ -1.09
VPS53-219ENST00000576019 SLC4A5Q9BY07 1137 aa8.26□□□□□ -1.09
VPS53-219ENST00000576019 PRKAG2Q9UGJ0 569 aa8.26□□□□□ -1.09
VPS53-219ENST00000576019 WWC3Q9ULE0 1092 aa8.26□□□□□ -1.09
VPS53-219ENST00000576019 IQSEC3Q9UPP2 1182 aaPredicted RBP8.26□□□□□ -1.09
VPS53-219ENST00000576019 XPCQ01831 940 aaPredicted RBP8.25□□□□□ -1.09
VPS53-219ENST00000576019 NAA30Q147X3 362 aaPredicted RBP8.25□□□□□ -1.09
VPS53-219ENST00000576019 EFCAB2Q5VUJ9 269 aa8.25□□□□□ -1.09
VPS53-219ENST00000576019 CCSER2Q9H7U1 834 aa8.25□□□□□ -1.09
VPS53-219ENST00000576019 CAPN10Q9HC96 672 aa8.25□□□□□ -1.09
VPS53-219ENST00000576019 MRS2Q9HD23 443 aa8.25□□□□□ -1.09
VPS53-219ENST00000576019 NUP153P49790 1475 aaKnown RBP8.25□□□□□ -1.09
VPS53-219ENST00000576019 BRWD3Q6RI45 1802 aa8.24□□□□□ -1.09
VPS53-219ENST00000576019 PLEKHD1A6NEE1 506 aa8.24□□□□□ -1.09
VPS53-219ENST00000576019 JUNDP17535 347 aa8.24□□□□□ -1.09
VPS53-219ENST00000576019 FAM98CQ17RN3 349 aaKnown RBP8.24□□□□□ -1.09
VPS53-219ENST00000576019 ADGRD1Q6QNK2 874 aa8.24□□□□□ -1.09
VPS53-219ENST00000576019 TSEN2Q8NCE0 465 aaKnown RBP8.24□□□□□ -1.09
VPS53-219ENST00000576019 RNF19AQ9NV58 838 aa8.24□□□□□ -1.09
VPS53-219ENST00000576019 RABGEF1Q9UJ41 708 aa8.24□□□□□ -1.09
VPS53-219ENST00000576019 TMA7Q9Y2S6 64 aaKnown RBP8.24□□□□□ -1.09
VPS53-219ENST00000576019 NKTRP30414 1462 aaKnown RBP8.24□□□□□ -1.09
VPS53-219ENST00000576019 AATKQ6ZMQ8 1374 aa8.23□□□□□ -1.09
VPS53-219ENST00000576019 GTF2F1P35269 517 aaKnown RBP eCLIP8.23□□□□□ -1.09
VPS53-219ENST00000576019 FMR1Q06787 632 aaKnown RBP eCLIP8.23□□□□□ -1.094e-8■■■■■ 46.3
VPS53-219ENST00000576019 NOP9Q86U38 636 aaKnown RBP8.23□□□□□ -1.09
VPS53-219ENST00000576019 HELQQ8TDG4 1101 aa8.23□□□□□ -1.09
VPS53-219ENST00000576019 ARHGAP9Q9BRR9 750 aa8.23□□□□□ -1.09
VPS53-219ENST00000576019 RBCK1Q9BYM8 510 aa8.23□□□□□ -1.09
VPS53-219ENST00000576019 SPON1Q9HCB6 807 aa8.23□□□□□ -1.09
VPS53-219ENST00000576019 PARP2Q9UGN5 583 aa8.23□□□□□ -1.09
VPS53-219ENST00000576019 MYO5CQ9NQX4 1742 aa8.23□□□□□ -1.09
VPS53-219ENST00000576019 PLXNC1O60486 1568 aa8.22□□□□□ -1.09
VPS53-219ENST00000576019 CTTNBP2Q8WZ74 1663 aa8.22□□□□□ -1.09
VPS53-219ENST00000576019 ACTN4O43707 911 aaKnown RBP8.22□□□□□ -1.09
VPS53-219ENST00000576019 PTCD1O75127 700 aaKnown RBP8.22□□□□□ -1.09
VPS53-219ENST00000576019 LDHBP07195 334 aaKnown RBP8.22□□□□□ -1.09
VPS53-219ENST00000576019 ATP2B1P20020 1258 aa8.22□□□□□ -1.09
VPS53-219ENST00000576019 WEE1P30291 646 aa8.22□□□□□ -1.09
VPS53-219ENST00000576019 MAPK8P45983 427 aa8.22□□□□□ -1.09
VPS53-219ENST00000576019 FANCCQ00597 558 aa8.22□□□□□ -1.09
VPS53-219ENST00000576019 NBPF14Q5TI25 921 aa8.22□□□□□ -1.09
VPS53-219ENST00000576019 DHX37Q8IY37 1157 aaKnown RBP8.22□□□□□ -1.09
VPS53-219ENST00000576019 DUSP9Q99956 384 aaKnown RBP8.22□□□□□ -1.09
VPS53-219ENST00000576019 CUEDC1Q9NWM3 386 aaPredicted RBP8.22□□□□□ -1.09
VPS53-219ENST00000576019 VPS9D1Q9Y2B5 631 aa8.22□□□□□ -1.09
VPS53-219ENST00000576019 PCDHGA11Q9Y5H2 935 aa8.22□□□□□ -1.09
VPS53-219ENST00000576019 MAST1Q9Y2H9 1570 aa8.22□□□□□ -1.09
VPS53-219ENST00000576019 DISP2A7MBM2 1401 aa8.21□□□□□ -1.09
VPS53-219ENST00000576019 PZPP20742 1482 aa8.21□□□□□ -1.09
VPS53-219ENST00000576019 CAMSAP2Q08AD1 1489 aa8.21□□□□□ -1.09
VPS53-219ENST00000576019 TREHO43280 583 aa8.21□□□□□ -1.1
VPS53-219ENST00000576019 HRO43593 1189 aa8.21□□□□□ -1.1
VPS53-219ENST00000576019 MPSTP25325 297 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms