RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 AEBP2Q6ZN18 517 aaPredicted RBP19.27■□□□□ 0.68
VPS53-219ENST00000576019 CHIC1Q5VXU3 224 aa18.67■□□□□ 0.58
VPS53-219ENST00000576019 SENP3Q9H4L4 574 aaPredicted RBP16.4■□□□□ 0.22
VPS53-219ENST00000576019 PHF23Q9BUL5 403 aaPredicted RBP16.39■□□□□ 0.21
VPS53-219ENST00000576019 FOXD1Q16676 465 aa15.22■□□□□ 0.03
VPS53-219ENST00000576019 PLPPR3Q6T4P5 718 aa15.07■□□□□ 0
VPS53-219ENST00000576019 PPP6R1Q9UPN7 881 aa14.5□□□□□ -0.09
VPS53-219ENST00000576019 ADRA2BP18089 450 aa14.46□□□□□ -0.09
VPS53-219ENST00000576019 EHMT2Q96KQ7 1210 aa14.43□□□□□ -0.1
VPS53-219ENST00000576019 PIAS4Q8N2W9 510 aaPredicted RBP14.29□□□□□ -0.12
VPS53-219ENST00000576019 MSH5O43196 834 aa14.12□□□□□ -0.15
VPS53-219ENST00000576019 KCNA4P22459 653 aa14.09□□□□□ -0.15
VPS53-219ENST00000576019 CSRNP3Q8WYN3 585 aa13.71□□□□□ -0.21
VPS53-219ENST00000576019 SLC4A1APQ9BWU0 796 aaKnown RBP13.56□□□□□ -0.24
VPS53-219ENST00000576019 DNAJC5BQ9UF47 199 aa13.4□□□□□ -0.26
VPS53-219ENST00000576019 SLC24A1O60721 1099 aa13.39□□□□□ -0.27
VPS53-219ENST00000576019 DNAJC5Q9H3Z4 198 aa13.29□□□□□ -0.28
VPS53-219ENST00000576019 SCAF1Q9H7N4 1312 aaKnown RBP13.26□□□□□ -0.29
VPS53-219ENST00000576019 PPP4R3CPQ6ZMV5 832 aa13.24□□□□□ -0.29
VPS53-219ENST00000576019 MAPK8IP2Q13387 824 aaPredicted RBP13.17□□□□□ -0.3
VPS53-219ENST00000576019 POTEDQ86YR6 584 aa13.15□□□□□ -0.3
VPS53-219ENST00000576019 NCBP3Q53F19 620 aaKnown RBP13.08□□□□□ -0.32
VPS53-219ENST00000576019 RTN4Q9NQC3 1192 aaKnown RBP13.06□□□□□ -0.32
VPS53-219ENST00000576019 DMRT2Q9Y5R5 561 aa13.06□□□□□ -0.32
VPS53-219ENST00000576019 ZBTB22O15209 634 aa13.02□□□□□ -0.33
VPS53-219ENST00000576019 ABCC9O60706 1549 aa13.02□□□□□ -0.33
VPS53-219ENST00000576019 NPM3O75607 178 aaKnown RBP12.98□□□□□ -0.33
VPS53-219ENST00000576019 AMER1Q5JTC6 1135 aaPredicted RBP12.94□□□□□ -0.34
VPS53-219ENST00000576019 CNKSR2Q8WXI2 1034 aa12.93□□□□□ -0.34
VPS53-219ENST00000576019 HOXD11P31277 338 aaPredicted RBP12.74□□□□□ -0.37
VPS53-219ENST00000576019 RNF216Q9NWF9 866 aaPredicted RBP12.73□□□□□ -0.37
VPS53-219ENST00000576019 FOXD4L1Q9NU39 408 aa12.62□□□□□ -0.39
VPS53-219ENST00000576019 NISCHQ9Y2I1 1504 aa12.49□□□□□ -0.41
VPS53-219ENST00000576019 DCAF8L1A6NGE4 600 aa12.42□□□□□ -0.42
VPS53-219ENST00000576019 FKBP8Q14318 412 aa12.36□□□□□ -0.43
VPS53-219ENST00000576019 RNF39Q9H2S5 420 aa12.09□□□□□ -0.47
VPS53-219ENST00000576019 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.08□□□□□ -0.48
VPS53-219ENST00000576019 TRIM41Q8WV44 630 aa12.06□□□□□ -0.48
VPS53-219ENST00000576019 SLC4A2P04920 1241 aa12.01□□□□□ -0.49
VPS53-219ENST00000576019 ATXN8OSP0DMR3 200 aa12□□□□□ -0.49
VPS53-219ENST00000576019 C1QBPQ07021 282 aaKnown RBP11.94□□□□□ -0.5
VPS53-219ENST00000576019 MYCNP04198 464 aaPredicted RBP11.93□□□□□ -0.5
VPS53-219ENST00000576019 PLCB2Q00722 1185 aa11.92□□□□□ -0.5
VPS53-219ENST00000576019 U3KPZ7 1027 aaPredicted RBP11.9□□□□□ -0.5
VPS53-219ENST00000576019 CECR2Q9BXF3 1484 aa11.89□□□□□ -0.51
VPS53-219ENST00000576019 PRKCSHP14314 528 aaPredicted RBP11.88□□□□□ -0.51
VPS53-219ENST00000576019 CACNB1Q02641 598 aaPredicted RBP11.86□□□□□ -0.51
VPS53-219ENST00000576019 RB1CC1Q8TDY2 1594 aa11.85□□□□□ -0.51
VPS53-219ENST00000576019 PABPN1Q86U42 306 aaKnown RBP eCLIP11.85□□□□□ -0.51
VPS53-219ENST00000576019 CUX2O14529 1486 aa11.83□□□□□ -0.52
VPS53-219ENST00000576019 HAP1P54257 671 aaPredicted RBP11.83□□□□□ -0.52
VPS53-219ENST00000576019 CCDC180Q9P1Z9 1646 aa11.81□□□□□ -0.52
VPS53-219ENST00000576019 BCANQ96GW7 911 aa11.78□□□□□ -0.52
VPS53-219ENST00000576019 CC2D2AQ9P2K1 1620 aa11.73□□□□□ -0.53
VPS53-219ENST00000576019 TAOK2Q9UL54 1235 aa11.72□□□□□ -0.53
VPS53-219ENST00000576019 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.7□□□□□ -0.54
VPS53-219ENST00000576019 HNRNPUL2Q1KMD3 747 aaKnown RBP11.7□□□□□ -0.54
VPS53-219ENST00000576019 DCAF8L2P0C7V8 631 aa11.65□□□□□ -0.54
VPS53-219ENST00000576019 SAMD1Q6SPF0 538 aaPredicted RBP11.65□□□□□ -0.54
VPS53-219ENST00000576019 ATF5Q9Y2D1 282 aaPredicted RBP11.63□□□□□ -0.55
VPS53-219ENST00000576019 APLP2Q06481 763 aa11.62□□□□□ -0.55
VPS53-219ENST00000576019 ILDR1Q86SU0 546 aaPredicted RBP11.6□□□□□ -0.55
VPS53-219ENST00000576019 BICRAQ9NZM4 1560 aa11.59□□□□□ -0.55
VPS53-219ENST00000576019 SPINK5Q9NQ38 1064 aaPredicted RBP11.59□□□□□ -0.55
VPS53-219ENST00000576019 UNC13AQ9UPW8 1703 aa11.59□□□□□ -0.55
VPS53-219ENST00000576019 TPRNQ4KMQ1 711 aa11.58□□□□□ -0.56
VPS53-219ENST00000576019 VSIG10Q8N0Z9 540 aa11.55□□□□□ -0.56
VPS53-219ENST00000576019 CAPN15O75808 1086 aa11.53□□□□□ -0.56
VPS53-219ENST00000576019 FBXO3Q9UK99 471 aa11.53□□□□□ -0.56
VPS53-219ENST00000576019 ZNF219Q9P2Y4 722 aaPredicted RBP11.48□□□□□ -0.57
VPS53-219ENST00000576019 NACADO15069 1562 aa11.46□□□□□ -0.57
VPS53-219ENST00000576019 TRHP20396 242 aaPredicted RBP11.43□□□□□ -0.58
VPS53-219ENST00000576019 DSG3P32926 999 aa11.43□□□□□ -0.58
VPS53-219ENST00000576019 VASPP50552 380 aaPredicted RBP11.43□□□□□ -0.58
VPS53-219ENST00000576019 KDM2AQ9Y2K7 1162 aa11.41□□□□□ -0.58
VPS53-219ENST00000576019 EIF4G1Q04637 1599 aaKnown RBP11.39□□□□□ -0.59
VPS53-219ENST00000576019 FBLN2P98095 1184 aa11.37□□□□□ -0.59
VPS53-219ENST00000576019 PKD2Q13563 968 aa11.37□□□□□ -0.59
VPS53-219ENST00000576019 IFNLR1Q8IU57 520 aaPredicted RBP11.36□□□□□ -0.59
VPS53-219ENST00000576019 SPDYE4A6NLX3 237 aa11.35□□□□□ -0.59
VPS53-219ENST00000576019 SHROOM4Q9ULL8 1493 aa11.34□□□□□ -0.59
VPS53-219ENST00000576019 ERCC6Q03468 1493 aa11.32□□□□□ -0.6
VPS53-219ENST00000576019 ABCB7O75027 752 aa11.29□□□□□ -0.6
VPS53-219ENST00000576019 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.29□□□□□ -0.6
VPS53-219ENST00000576019 PAXIP1Q6ZW49 1069 aaPredicted RBP11.28□□□□□ -0.6
VPS53-219ENST00000576019 TIMELESSQ9UNS1 1208 aa11.28□□□□□ -0.6
VPS53-219ENST00000576019 CFAP44Q96MT7 982 aa11.26□□□□□ -0.61
VPS53-219ENST00000576019 PROM2Q8N271 834 aa11.25□□□□□ -0.61
VPS53-219ENST00000576019 BBXQ8WY36 941 aaPredicted RBP11.25□□□□□ -0.61
VPS53-219ENST00000576019 POLA2Q14181 598 aa11.22□□□□□ -0.61
VPS53-219ENST00000576019 TULP1O00294 542 aaPredicted RBP11.21□□□□□ -0.61
VPS53-219ENST00000576019 NPM1P06748 294 aaKnown RBP eCLIP11.2□□□□□ -0.62
VPS53-219ENST00000576019 MKRN4PQ13434 485 aaPredicted RBP11.15□□□□□ -0.62
VPS53-219ENST00000576019 DAXXQ9UER7 740 aaPredicted RBP11.14□□□□□ -0.63
VPS53-219ENST00000576019 TSHZ2Q9NRE2 1034 aa11.13□□□□□ -0.63
VPS53-219ENST00000576019 ECM2O94769 699 aaPredicted RBP11.12□□□□□ -0.63
VPS53-219ENST00000576019 ZBTB12Q9Y330 459 aaPredicted RBP11.08□□□□□ -0.64
VPS53-219ENST00000576019 SPRYD3Q8NCJ5 442 aa11.06□□□□□ -0.64
VPS53-219ENST00000576019 ARXQ96QS3 562 aa11.06□□□□□ -0.64
VPS53-219ENST00000576019 GTF3C3Q9Y5Q9 886 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms