RNA–Protein interactions for RNA: YMR171C

EAR1, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene EAR1, Length 1,653 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
EAR1YMR171C ALG3P38179 458 aa5.61□□□□□ -1.51
EAR1YMR171C FUN12P39730 1002 aaKnown RBP5.61□□□□□ -1.51
EAR1YMR171C BUD9P53226 547 aa5.61□□□□□ -1.51
EAR1YMR171C NAN1Q02931 896 aaKnown RBP5.61□□□□□ -1.51
EAR1YMR171C AOS1Q06624 347 aa5.61□□□□□ -1.51
EAR1YMR171C LAP2Q10740 671 aa5.61□□□□□ -1.51
EAR1YMR171C RVB2Q12464 471 aaKnown RBP5.61□□□□□ -1.51
EAR1YMR171C INO1P11986 533 aa5.6□□□□□ -1.51
EAR1YMR171C RAD4P14736 754 aa5.6□□□□□ -1.51
EAR1YMR171C FPR4Q06205 392 aaPredicted RBP5.6□□□□□ -1.51
EAR1YMR171C URN1Q06525 465 aaKnown RBP5.6□□□□□ -1.51
EAR1YMR171C BDF2Q07442 638 aa5.6□□□□□ -1.51
EAR1YMR171C YDL144CQ07589 356 aa5.6□□□□□ -1.51
EAR1YMR171C BCK1Q01389 1478 aa5.6□□□□□ -1.51
EAR1YMR171C SBA1P28707 216 aaKnown RBP5.59□□□□□ -1.51
EAR1YMR171C YKL091CP33324 310 aaKnown RBP5.59□□□□□ -1.51
EAR1YMR171C MCM7P38132 845 aa5.59□□□□□ -1.51
EAR1YMR171C MCX1P38323 520 aaPredicted RBP5.59□□□□□ -1.51
EAR1YMR171C CDC53Q12018 815 aaKnown RBP5.59□□□□□ -1.51
EAR1YMR171C YPL066WQ12194 479 aa5.59□□□□□ -1.51
EAR1YMR171C PTC5Q12511 572 aa5.59□□□□□ -1.51
EAR1YMR171C STI1P15705 589 aaKnown RBP RIP-Chip data5.59□□□□□ -1.52not detected
EAR1YMR171C PUF4P25339 888 aaKnown RBP RIP-Chip data5.59□□□□□ -1.52not detected
EAR1YMR171C SFA1P32771 386 aa5.59□□□□□ -1.52
EAR1YMR171C STE5P32917 917 aa5.59□□□□□ -1.52
EAR1YMR171C MDJ1P35191 511 aa5.59□□□□□ -1.52
EAR1YMR171C GPT2P36148 743 aa5.59□□□□□ -1.52
EAR1YMR171C VBA5P36172 582 aa5.59□□□□□ -1.52
EAR1YMR171C HSE1P38753 452 aa5.59□□□□□ -1.52
EAR1YMR171C CHZ1P40019 153 aaPredicted RBP5.59□□□□□ -1.52
EAR1YMR171C MPH1P40562 993 aa5.59□□□□□ -1.52
EAR1YMR171C KRI1P42846 591 aaKnown RBP5.59□□□□□ -1.52
EAR1YMR171C NSG2P53898 299 aa5.59□□□□□ -1.52
EAR1YMR171C EAF7P53911 425 aaKnown RBP5.59□□□□□ -1.52
EAR1YMR171C TAF8Q03750 510 aa5.59□□□□□ -1.52
EAR1YMR171C RKM4Q12504 494 aa5.59□□□□□ -1.52
EAR1YMR171C DNF3Q12674 1656 aa5.59□□□□□ -1.52
EAR1YMR171C MLS1P30952 554 aa5.58□□□□□ -1.52
EAR1YMR171C YBR184WP38299 523 aa5.58□□□□□ -1.52
EAR1YMR171C VPS53P47061 822 aa5.58□□□□□ -1.52
EAR1YMR171C HUL5P53119 910 aa5.58□□□□□ -1.52
EAR1YMR171C SHE9Q04172 456 aa5.58□□□□□ -1.52
EAR1YMR171C RSA3Q05942 220 aaKnown RBP5.58□□□□□ -1.52
EAR1YMR171C AI3P03877 415 aa5.57□□□□□ -1.52
EAR1YMR171C RET1P22276 1149 aaKnown RBP5.57□□□□□ -1.52
EAR1YMR171C RGD1P38339 666 aa5.57□□□□□ -1.52
EAR1YMR171C QNS1P38795 714 aaKnown RBP5.57□□□□□ -1.52
EAR1YMR171C MSH4P40965 878 aaPredicted RBP5.57□□□□□ -1.52
EAR1YMR171C PRY1P47032 299 aa5.57□□□□□ -1.52
EAR1YMR171C TIM54P47045 478 aa5.57□□□□□ -1.52
EAR1YMR171C YKL107WP34251 309 aa5.56□□□□□ -1.52
EAR1YMR171C MRP8P35719 219 aa5.56□□□□□ -1.52
EAR1YMR171C YAP3P38749 330 aa5.56□□□□□ -1.52
EAR1YMR171C YGL176CP46945 554 aa5.56□□□□□ -1.52
EAR1YMR171C HNT2P49775 206 aa5.56□□□□□ -1.52
EAR1YMR171C RPN4Q03465 531 aa5.56□□□□□ -1.52
EAR1YMR171C USO1P25386 1790 aa5.56□□□□□ -1.52
EAR1YMR171C RAD9P14737 1309 aa5.56□□□□□ -1.52
EAR1YMR171C NFS1P25374 497 aa5.56□□□□□ -1.52
EAR1YMR171C RSC6P25632 483 aa5.56□□□□□ -1.52
EAR1YMR171C IME2P32581 645 aa5.56□□□□□ -1.52
EAR1YMR171C SMY2P32909 740 aaKnown RBP5.56□□□□□ -1.52
EAR1YMR171C NNK1P36003 928 aa5.56□□□□□ -1.52
EAR1YMR171C YLR257WQ06146 321 aaKnown RBP5.56□□□□□ -1.52
EAR1YMR171C YDR215CQ12240 137 aa5.56□□□□□ -1.52
EAR1YMR171C SUI2P20459 304 aaKnown RBP5.55□□□□□ -1.52
EAR1YMR171C YHR020WP38708 688 aaKnown RBP5.55□□□□□ -1.52
EAR1YMR171C NMD3P38861 518 aaKnown RBP5.55□□□□□ -1.52
EAR1YMR171C IRR1P40541 1150 aa5.55□□□□□ -1.52
EAR1YMR171C YFR016CP43597 1233 aaKnown RBP5.55□□□□□ -1.52
EAR1YMR171C CIT2P08679 460 aa5.54□□□□□ -1.52
EAR1YMR171C CLC1P17891 233 aa5.54□□□□□ -1.52
EAR1YMR171C YCK2P23292 546 aaKnown RBP5.54□□□□□ -1.52
EAR1YMR171C KIP1P28742 1111 aa5.54□□□□□ -1.52
EAR1YMR171C PIN4P34217 668 aaKnown RBP RIP-Chip data5.54□□□□□ -1.52not detected
EAR1YMR171C TYS1P36421 394 aaKnown RBP5.54□□□□□ -1.52
EAR1YMR171C PBP2P38151 413 aaKnown RBP RIP-Chip data5.54□□□□□ -1.52not detected
EAR1YMR171C SLN1P39928 1220 aaPredicted RBP5.54□□□□□ -1.52
EAR1YMR171C GNT1Q12096 491 aa5.54□□□□□ -1.52
EAR1YMR171C YOR131CQ12486 218 aa5.54□□□□□ -1.52
EAR1YMR171C HAP1P0CE41 1502 aa5.54□□□□□ -1.52
EAR1YMR171C YEF3P16521 1044 aaKnown RBP5.53□□□□□ -1.52
EAR1YMR171C MBP1P39678 833 aa5.53□□□□□ -1.52
EAR1YMR171C BUD6P41697 788 aa5.53□□□□□ -1.52
EAR1YMR171C PFD1P46988 109 aa5.53□□□□□ -1.52
EAR1YMR171C MPP10P47083 593 aaKnown RBP5.53□□□□□ -1.52
EAR1YMR171C ARI1P53111 347 aaKnown RBP5.53□□□□□ -1.52
EAR1YMR171C SPO75Q07798 868 aa5.53□□□□□ -1.52
EAR1YMR171C FMP25Q08023 583 aa5.53□□□□□ -1.52
EAR1YMR171C YPL260WQ08977 551 aa5.53□□□□□ -1.52
EAR1YMR171C SBP1P10080 294 aaKnown RBP5.53□□□□□ -1.52
EAR1YMR171C YER152CP10356 443 aa5.53□□□□□ -1.52
EAR1YMR171C RPL8BP29453 256 aaKnown RBP5.53□□□□□ -1.52
EAR1YMR171C PBY1P38254 753 aa5.53□□□□□ -1.52
EAR1YMR171C OPY1P38271 328 aa5.53□□□□□ -1.52
EAR1YMR171C GPB2P39717 880 aa5.53□□□□□ -1.52
EAR1YMR171C RTR1P40084 226 aaPredicted RBP5.53□□□□□ -1.52
EAR1YMR171C BUD27P43573 796 aaKnown RBP RIP-Chip data5.53□□□□□ -1.52not detected
EAR1YMR171C ALT1P52893 592 aa5.53□□□□□ -1.52
EAR1YMR171C YMR187CQ03236 431 aa5.53□□□□□ -1.52
Retrieved 100 of 5,963 RNA–protein pairs in 40.4 ms