RNA–Protein interactions for RNA: YFL044C

OTU1, Transcript of Deubiquitylation enzyme that binds to the chaperone-ATPase Cdc48p, yeast

Gene OTU1, Length 906 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
OTU1	YFL044C	PEP7	P32609	515 aa		4.67	□□□□□ -1.66
OTU1	YFL044C	RPS26A	P39938	119 aa	Known RBP	4.67	□□□□□ -1.66
OTU1	YFL044C	RPS26B	P39939	119 aa	Known RBP	4.67	□□□□□ -1.66
OTU1	YFL044C	VAC8	P39968	578 aa		4.67	□□□□□ -1.66
OTU1	YFL044C	YGR035C	P53222	116 aa		4.67	□□□□□ -1.66
OTU1	YFL044C	HEF3	P53978	1044 aa	Known RBP	4.67	□□□□□ -1.66
OTU1	YFL044C	ULP1	Q02724	621 aa		4.67	□□□□□ -1.66
OTU1	YFL044C	HPF1	Q05164	967 aa		4.67	□□□□□ -1.66
OTU1	YFL044C	SGD1	Q06132	899 aa		4.67	□□□□□ -1.66
OTU1	YFL044C	TOS4	Q06266	489 aa		4.67	□□□□□ -1.66
OTU1	YFL044C	PAH1	P32567	862 aa		4.66	□□□□□ -1.66
OTU1	YFL044C	PPT1	P53043	513 aa		4.66	□□□□□ -1.66
OTU1	YFL044C	ALD6	P54115	500 aa	Known RBP	4.66	□□□□□ -1.66
OTU1	YFL044C	DAL4	Q04895	635 aa		4.66	□□□□□ -1.66
OTU1	YFL044C	SYT1	Q06836	1226 aa		4.66	□□□□□ -1.66
OTU1	YFL044C	PPM2	Q08282	695 aa		4.66	□□□□□ -1.66
OTU1	YFL044C	TEL1	P38110	2787 aa		4.66	□□□□□ -1.66
OTU1	YFL044C	FLP1	P03870	423 aa		4.65	□□□□□ -1.67
OTU1	YFL044C	IDI1	P15496	288 aa		4.65	□□□□□ -1.67
OTU1	YFL044C	PYC2	P32327	1180 aa	Known RBP	4.65	□□□□□ -1.67
OTU1	YFL044C	SPC42	P36094	363 aa		4.65	□□□□□ -1.67
OTU1	YFL044C	MSC7	P38694	644 aa		4.65	□□□□□ -1.67
OTU1	YFL044C	MPP10	P47083	593 aa	Known RBP	4.65	□□□□□ -1.67
OTU1	YFL044C	LYS5	P50113	272 aa		4.65	□□□□□ -1.67
OTU1	YFL044C	YGR122W	P53272	402 aa		4.65	□□□□□ -1.67
OTU1	YFL044C	ESF1	Q06344	628 aa	Known RBP	4.65	□□□□□ -1.67
OTU1	YFL044C	RGA2	Q06407	1009 aa		4.65	□□□□□ -1.67
OTU1	YFL044C	GIN4	Q12263	1142 aa		4.65	□□□□□ -1.67
OTU1	YFL044C	YOL098C	Q12496	1037 aa		4.65	□□□□□ -1.67
OTU1	YFL044C	SEN1	Q00416	2231 aa	Known RBP	4.65	□□□□□ -1.67
OTU1	YFL044C	RAD53	P22216	821 aa		4.64	□□□□□ -1.67
OTU1	YFL044C	UBP12	P39538	1254 aa		4.64	□□□□□ -1.67
OTU1	YFL044C	NET1	P47035	1189 aa		4.64	□□□□□ -1.67
OTU1	YFL044C	CTR9	P89105	1077 aa		4.64	□□□□□ -1.67
OTU1	YFL044C	EAR1	Q03212	550 aa		4.64	□□□□□ -1.67
OTU1	YFL044C	TY1A-DR2	Q03964	440 aa	Known RBP	4.64	□□□□□ -1.67
OTU1	YFL044C	YCS4	Q06156	1176 aa		4.64	□□□□□ -1.67
OTU1	YFL044C	FPR4	Q06205	392 aa	Predicted RBP	4.64	□□□□□ -1.67
OTU1	YFL044C	CYC8	P14922	966 aa		4.63	□□□□□ -1.67
OTU1	YFL044C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	4.63	□□□□□ -1.67	not detected
OTU1	YFL044C	FAA3	P39002	694 aa		4.63	□□□□□ -1.67
OTU1	YFL044C	PRK1	P40494	810 aa		4.63	□□□□□ -1.67
OTU1	YFL044C	MAD1	P40957	749 aa		4.63	□□□□□ -1.67
OTU1	YFL044C	YFH7	P43591	353 aa		4.63	□□□□□ -1.67
OTU1	YFL044C	MON1	P53129	644 aa		4.63	□□□□□ -1.67
OTU1	YFL044C	RMD1	Q03441	430 aa		4.63	□□□□□ -1.67
OTU1	YFL044C	SNU66	Q12420	587 aa	Predicted RBP	4.63	□□□□□ -1.67
OTU1	YFL044C	FLO1	P32768	1537 aa		4.62	□□□□□ -1.67
OTU1	YFL044C	SNF3	P10870	884 aa		4.62	□□□□□ -1.67
OTU1	YFL044C	FUS1	P11710	512 aa		4.62	□□□□□ -1.67
OTU1	YFL044C	TRK2	P28584	889 aa		4.62	□□□□□ -1.67
OTU1	YFL044C	ERG7	P38604	731 aa		4.62	□□□□□ -1.67
OTU1	YFL044C	KEL1	P38853	1164 aa	Known RBP	4.62	□□□□□ -1.67
OTU1	YFL044C	RNH70	P53331	553 aa		4.62	□□□□□ -1.67
OTU1	YFL044C	YAF9	P53930	226 aa		4.62	□□□□□ -1.67
OTU1	YFL044C	VPS16	Q03308	798 aa		4.62	□□□□□ -1.67
OTU1	YFL044C	MSH6	Q03834	1242 aa		4.62	□□□□□ -1.67
OTU1	YFL044C	TY3A-G	Q12173	290 aa		4.62	□□□□□ -1.67
OTU1	YFL044C	TY3A-I	Q99219	290 aa		4.62	□□□□□ -1.67
OTU1	YFL044C	HXK1	P04806	485 aa	Known RBP	4.61	□□□□□ -1.67
OTU1	YFL044C	RAD2	P07276	1031 aa		4.61	□□□□□ -1.67
OTU1	YFL044C	SRP40	P32583	406 aa	Predicted RBP	4.61	□□□□□ -1.67
OTU1	YFL044C	PET112	P33893	541 aa		4.61	□□□□□ -1.67
OTU1	YFL044C	OCT1	P35999	772 aa		4.61	□□□□□ -1.67
OTU1	YFL044C	NMD2	P38798	1089 aa	Known RBP	4.61	□□□□□ -1.67
OTU1	YFL044C	RVS167	P39743	482 aa	Known RBP	4.61	□□□□□ -1.67
OTU1	YFL044C	PSF2	P40359	213 aa		4.61	□□□□□ -1.67
OTU1	YFL044C	MRPS18	P42847	217 aa		4.61	□□□□□ -1.67
OTU1	YFL044C	NUT1	P53114	1132 aa		4.61	□□□□□ -1.67
OTU1	YFL044C	DOS2	P54858	310 aa		4.61	□□□□□ -1.67
OTU1	YFL044C	PMT7	Q06644	662 aa		4.61	□□□□□ -1.67
OTU1	YFL044C	YDL144C	Q07589	356 aa		4.61	□□□□□ -1.67
OTU1	YFL044C	MCD1	Q12158	566 aa		4.61	□□□□□ -1.67
OTU1	YFL044C	CLN2	P20438	545 aa		4.6	□□□□□ -1.67
OTU1	YFL044C	ADP1	P25371	1049 aa		4.6	□□□□□ -1.67
OTU1	YFL044C	UGA4	P32837	571 aa		4.6	□□□□□ -1.67
OTU1	YFL044C	YHR131C	P38835	850 aa		4.6	□□□□□ -1.67
OTU1	YFL044C	BOI2	P39969	1040 aa		4.6	□□□□□ -1.67
OTU1	YFL044C	INP51	P40559	946 aa	Known RBP	4.6	□□□□□ -1.67
OTU1	YFL044C	MSH4	P40965	878 aa	Predicted RBP	4.6	□□□□□ -1.67
OTU1	YFL044C	NOP2	P40991	618 aa	Known RBP	4.6	□□□□□ -1.67
OTU1	YFL044C	IOC3	P43596	787 aa		4.6	□□□□□ -1.67
OTU1	YFL044C	ECM30	Q06673	1274 aa		4.6	□□□□□ -1.67
OTU1	YFL044C	PCL8	Q08966	492 aa		4.6	□□□□□ -1.67
OTU1	YFL044C	PIN2	Q12057	282 aa		4.6	□□□□□ -1.67
OTU1	YFL044C	ECM29	P38737	1868 aa		4.6	□□□□□ -1.67
OTU1	YFL044C	PMA1	P05030	918 aa	Known RBP	4.59	□□□□□ -1.67
OTU1	YFL044C	PIF1	P07271	859 aa		4.59	□□□□□ -1.67
OTU1	YFL044C	PRE9	P23638	258 aa	Known RBP	4.59	□□□□□ -1.67
OTU1	YFL044C	CDC60	P26637	1090 aa	Known RBP	4.59	□□□□□ -1.67
OTU1	YFL044C	MCM5	P29496	775 aa	Known RBP	4.59	□□□□□ -1.67
OTU1	YFL044C	SWC3	P31376	625 aa		4.59	□□□□□ -1.67
OTU1	YFL044C	KNS1	P32350	737 aa	Predicted RBP	4.59	□□□□□ -1.67
OTU1	YFL044C	RPT3	P33298	428 aa	Known RBP	4.59	□□□□□ -1.67
OTU1	YFL044C	VAB2	P40003	282 aa		4.59	□□□□□ -1.67
OTU1	YFL044C	AIM21	P40563	679 aa		4.59	□□□□□ -1.67
OTU1	YFL044C	JJJ3	P47138	172 aa		4.59	□□□□□ -1.67
OTU1	YFL044C	RSM26	P47141	266 aa		4.59	□□□□□ -1.67
OTU1	YFL044C	VPS62	P53285	467 aa		4.59	□□□□□ -1.67
OTU1	YFL044C	BIO5	P53744	561 aa	Known RBP	4.59	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 41.2 ms