RNA–Protein interactions for RNA: YLR260W

LCB5, Transcript of Minor sphingoid long-chain base kinase, yeast

Gene LCB5, Length 2,064 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCB5	YLR260W	YKU70	P32807	602 aa		4.2	□□□□□ -1.74
LCB5	YLR260W	SHC1	P39000	512 aa		4.2	□□□□□ -1.74
LCB5	YLR260W	ACF4	P47129	309 aa		4.2	□□□□□ -1.74
LCB5	YLR260W	ROM1	P53046	1155 aa		4.2	□□□□□ -1.74
LCB5	YLR260W	HDA3	Q06623	655 aa		4.2	□□□□□ -1.74
LCB5	YLR260W	TSC13	Q99190	310 aa		4.2	□□□□□ -1.74
LCB5	YLR260W	HAP4	P14064	554 aa		4.2	□□□□□ -1.74
LCB5	YLR260W	FBP26	P32604	452 aa		4.2	□□□□□ -1.74
LCB5	YLR260W	RPT1	P33299	467 aa	Known RBP	4.2	□□□□□ -1.74
LCB5	YLR260W	MKS1	P34072	584 aa		4.2	□□□□□ -1.74
LCB5	YLR260W	MAM1	P40065	302 aa		4.2	□□□□□ -1.74
LCB5	YLR260W	VID27	P40157	782 aa		4.2	□□□□□ -1.74
LCB5	YLR260W	YGR122W	P53272	402 aa		4.2	□□□□□ -1.74
LCB5	YLR260W	YDR306C	Q06640	478 aa		4.2	□□□□□ -1.74
LCB5	YLR260W	SLX4	Q12098	748 aa		4.2	□□□□□ -1.74
LCB5	YLR260W	FUR4	P05316	633 aa	Known RBP	4.19	□□□□□ -1.74
LCB5	YLR260W	PHO8	P11491	566 aa		4.19	□□□□□ -1.74
LCB5	YLR260W	AIM9	P40053	627 aa	Known RBP	4.19	□□□□□ -1.74
LCB5	YLR260W	GYP7	P48365	746 aa		4.19	□□□□□ -1.74
LCB5	YLR260W	ISU1	Q03020	165 aa		4.19	□□□□□ -1.74
LCB5	YLR260W	SRT1	Q03175	343 aa		4.19	□□□□□ -1.74
LCB5	YLR260W	SYF1	Q04048	859 aa	Predicted RBP	4.19	□□□□□ -1.74
LCB5	YLR260W	YDL144C	Q07589	356 aa		4.19	□□□□□ -1.74
LCB5	YLR260W	GAS5	Q08193	484 aa		4.19	□□□□□ -1.74
LCB5	YLR260W	MDM1	Q01846	1127 aa		4.18	□□□□□ -1.74
LCB5	YLR260W	GDE1	Q02979	1223 aa		4.18	□□□□□ -1.74
LCB5	YLR260W	DIB1	Q06819	143 aa	Predicted RBP	4.18	□□□□□ -1.74
LCB5	YLR260W	MET32	Q12041	191 aa		4.18	□□□□□ -1.74
LCB5	YLR260W	GRX6	Q12438	231 aa		4.18	□□□□□ -1.74
LCB5	YLR260W	SRS2	P12954	1174 aa		4.18	□□□□□ -1.74
LCB5	YLR260W	PEP7	P32609	515 aa		4.18	□□□□□ -1.74
LCB5	YLR260W	SNF7	P39929	240 aa	Known RBP	4.18	□□□□□ -1.74
LCB5	YLR260W	IES5	P40060	125 aa		4.18	□□□□□ -1.74
LCB5	YLR260W	FAF1	P40546	346 aa	Predicted RBP	4.18	□□□□□ -1.74
LCB5	YLR260W	FET4	P40988	552 aa		4.18	□□□□□ -1.74
LCB5	YLR260W	NOP14	Q99207	810 aa	Known RBP	4.18	□□□□□ -1.74
LCB5	YLR260W	FLO11	P08640	1367 aa		4.18	□□□□□ -1.74
LCB5	YLR260W	TY4B-P	A0A0B7P3V8	1104 aa		4.17	□□□□□ -1.74
LCB5	YLR260W	SPT2	P06843	333 aa	Predicted RBP	4.17	□□□□□ -1.74
LCB5	YLR260W	MPH2	P0CD99	609 aa		4.17	□□□□□ -1.74
LCB5	YLR260W	SUI2	P20459	304 aa	Known RBP	4.17	□□□□□ -1.74
LCB5	YLR260W	STV1	P37296	890 aa		4.17	□□□□□ -1.74
LCB5	YLR260W	SPL2	P38839	148 aa		4.17	□□□□□ -1.74
LCB5	YLR260W	NMD3	P38861	518 aa	Known RBP	4.17	□□□□□ -1.74
LCB5	YLR260W	AIR1	P40507	360 aa	Known RBP	4.17	□□□□□ -1.74
LCB5	YLR260W	YFL034W	P43564	1073 aa		4.17	□□□□□ -1.74
LCB5	YLR260W	DAS1	P47005	663 aa		4.17	□□□□□ -1.74
LCB5	YLR260W	CWC24	P53769	259 aa		4.17	□□□□□ -1.74
LCB5	YLR260W	RMD1	Q03441	430 aa		4.17	□□□□□ -1.74
LCB5	YLR260W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.17	□□□□□ -1.74	not detected
LCB5	YLR260W	GPI13	Q07830	1017 aa		4.17	□□□□□ -1.74
LCB5	YLR260W	TY4A-H	Q6Q5P6	413 aa		4.17	□□□□□ -1.74
LCB5	YLR260W	STE6	P12866	1290 aa		4.17	□□□□□ -1.74
LCB5	YLR260W	SWI3	P32591	825 aa		4.17	□□□□□ -1.74
LCB5	YLR260W	UTR2	P32623	467 aa		4.17	□□□□□ -1.74
LCB5	YLR260W	RPS26A	P39938	119 aa	Known RBP	4.17	□□□□□ -1.74
LCB5	YLR260W	RPS26B	P39939	119 aa	Known RBP	4.17	□□□□□ -1.74
LCB5	YLR260W	DFG5	Q05031	458 aa		4.17	□□□□□ -1.74
LCB5	YLR260W	YLR125W	Q12138	136 aa		4.17	□□□□□ -1.74
LCB5	YLR260W	GSC2	P40989	1895 aa		4.17	□□□□□ -1.74
LCB5	YLR260W	ADR1	P07248	1323 aa		4.16	□□□□□ -1.74
LCB5	YLR260W	PHO4	P07270	312 aa	Known RBP	4.16	□□□□□ -1.74
LCB5	YLR260W	PIF1	P07271	859 aa		4.16	□□□□□ -1.74
LCB5	YLR260W	MRP7	P12687	371 aa		4.16	□□□□□ -1.74
LCB5	YLR260W	SWC3	P31376	625 aa		4.16	□□□□□ -1.74
LCB5	YLR260W	THI4	P32318	326 aa		4.16	□□□□□ -1.74
LCB5	YLR260W	RAD24	P32641	659 aa		4.16	□□□□□ -1.74
LCB5	YLR260W	MTC2	P34246	357 aa		4.16	□□□□□ -1.74
LCB5	YLR260W	NUP133	P36161	1157 aa		4.16	□□□□□ -1.74
LCB5	YLR260W	YAP1801	P38856	637 aa		4.16	□□□□□ -1.74
LCB5	YLR260W	ICP55	P40051	511 aa		4.16	□□□□□ -1.74
LCB5	YLR260W	VPS4	P52917	437 aa		4.16	□□□□□ -1.74
LCB5	YLR260W	RPT4	P53549	437 aa	Known RBP	4.16	□□□□□ -1.74
LCB5	YLR260W	PKH1	Q03407	766 aa		4.16	□□□□□ -1.74
LCB5	YLR260W	PUN1	Q06991	263 aa		4.16	□□□□□ -1.74
LCB5	YLR260W	FOB1	O13329	566 aa		4.15	□□□□□ -1.74
LCB5	YLR260W	CDC4	P07834	779 aa		4.15	□□□□□ -1.74
LCB5	YLR260W	KRE2	P27809	442 aa		4.15	□□□□□ -1.74
LCB5	YLR260W	PET112	P33893	541 aa		4.15	□□□□□ -1.74
LCB5	YLR260W	DEF1	P35732	738 aa	Known RBP	4.15	□□□□□ -1.74
LCB5	YLR260W	YJR120W	P47157	116 aa		4.15	□□□□□ -1.74
LCB5	YLR260W	TOS4	Q06266	489 aa		4.15	□□□□□ -1.74
LCB5	YLR260W	TMA17	Q12513	150 aa		4.15	□□□□□ -1.74
LCB5	YLR260W	SWI5	P08153	709 aa		4.15	□□□□□ -1.75
LCB5	YLR260W	RPS6A	P0CX37	236 aa	Known RBP	4.15	□□□□□ -1.75
LCB5	YLR260W	RPS6B	P0CX38	236 aa	Predicted RBP	4.15	□□□□□ -1.75
LCB5	YLR260W	HIR1	P32479	840 aa		4.15	□□□□□ -1.75
LCB5	YLR260W	TFC3	P34111	1160 aa		4.15	□□□□□ -1.75
LCB5	YLR260W	MUM2	P38236	366 aa		4.15	□□□□□ -1.75
LCB5	YLR260W	YHR020W	P38708	688 aa	Known RBP	4.15	□□□□□ -1.75
LCB5	YLR260W	ETP1	P38748	585 aa	Known RBP	4.15	□□□□□ -1.75
LCB5	YLR260W	TIM54	P47045	478 aa		4.15	□□□□□ -1.75
LCB5	YLR260W	TRM44	Q02648	567 aa	Known RBP	4.15	□□□□□ -1.75
LCB5	YLR260W	SND1	Q04007	877 aa		4.15	□□□□□ -1.75
LCB5	YLR260W	TMA7	Q3E764	64 aa	Known RBP	4.15	□□□□□ -1.75
LCB5	YLR260W	VPS5	Q92331	675 aa		4.15	□□□□□ -1.75
LCB5	YLR260W	MGM1	P32266	881 aa		4.14	□□□□□ -1.75
LCB5	YLR260W	AFG2	P32794	780 aa		4.14	□□□□□ -1.75
LCB5	YLR260W	MNR2	P35724	969 aa		4.14	□□□□□ -1.75
LCB5	YLR260W	YIL089W	P40500	205 aa		4.14	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 22.6 ms