RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC48	YDL126C	IRS4	P36115	615 aa	Known RBP	5.23	□□□□□ -1.57
CDC48	YDL126C	RAD55	P38953	406 aa		5.23	□□□□□ -1.57
CDC48	YDL126C	QDR2	P40474	542 aa		5.23	□□□□□ -1.57
CDC48	YDL126C	SUI2	P20459	304 aa	Known RBP	5.23	□□□□□ -1.57
CDC48	YDL126C	KIP2	P28743	706 aa		5.23	□□□□□ -1.57
CDC48	YDL126C	PFD1	P46988	109 aa		5.23	□□□□□ -1.57
CDC48	YDL126C	ULP1	Q02724	621 aa		5.23	□□□□□ -1.57
CDC48	YDL126C	GDE1	Q02979	1223 aa		5.23	□□□□□ -1.57
CDC48	YDL126C	RVB2	Q12464	471 aa	Known RBP	5.23	□□□□□ -1.57
CDC48	YDL126C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	5.22	□□□□□ -1.57	not detected
CDC48	YDL126C	TIM23	P32897	222 aa		5.22	□□□□□ -1.57
CDC48	YDL126C	CIC1	P38779	376 aa	Known RBP	5.22	□□□□□ -1.57
CDC48	YDL126C	VPS4	P52917	437 aa		5.22	□□□□□ -1.57
CDC48	YDL126C	MEH1	Q02205	184 aa		5.22	□□□□□ -1.57
CDC48	YDL126C	CDC53	Q12018	815 aa	Known RBP	5.22	□□□□□ -1.57
CDC48	YDL126C	WRS1	Q12109	432 aa	Known RBP	5.22	□□□□□ -1.57
CDC48	YDL126C	YIR014W	P40570	242 aa		5.22	□□□□□ -1.57
CDC48	YDL126C	ADI1	Q03677	179 aa		5.22	□□□□□ -1.57
CDC48	YDL126C	MCD1	Q12158	566 aa		5.22	□□□□□ -1.57
CDC48	YDL126C	PEP7	P32609	515 aa		5.21	□□□□□ -1.58
CDC48	YDL126C	NOC2	P39744	710 aa	Known RBP	5.21	□□□□□ -1.58
CDC48	YDL126C	SNF7	P39929	240 aa	Known RBP	5.21	□□□□□ -1.58
CDC48	YDL126C	UBP9	P39967	754 aa		5.21	□□□□□ -1.58
CDC48	YDL126C	TAN1	P53072	289 aa	Predicted RBP	5.21	□□□□□ -1.58
CDC48	YDL126C	NUT1	P53114	1132 aa		5.21	□□□□□ -1.58
CDC48	YDL126C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	5.21	□□□□□ -1.58	not detected
CDC48	YDL126C	PSR1	Q07800	427 aa		5.21	□□□□□ -1.58
CDC48	YDL126C	PRD1	P25375	712 aa		5.21	□□□□□ -1.58
CDC48	YDL126C	NUP82	P40368	713 aa		5.21	□□□□□ -1.58
CDC48	YDL126C	JJJ2	P46997	583 aa		5.21	□□□□□ -1.58
CDC48	YDL126C	MAL11	P53048	616 aa		5.21	□□□□□ -1.58
CDC48	YDL126C	DAT1	P13483	248 aa	Known RBP	5.2	□□□□□ -1.58
CDC48	YDL126C	PRP5	P21372	849 aa	Predicted RBP	5.2	□□□□□ -1.58
CDC48	YDL126C	RDH54	P38086	958 aa		5.2	□□□□□ -1.58
CDC48	YDL126C	LDH1	P38139	375 aa		5.2	□□□□□ -1.58
CDC48	YDL126C	RIM11	P38615	370 aa		5.2	□□□□□ -1.58
CDC48	YDL126C	BNA1	P47096	177 aa		5.2	□□□□□ -1.58
CDC48	YDL126C	YJR120W	P47157	116 aa		5.2	□□□□□ -1.58
CDC48	YDL126C	SKP1	P52286	194 aa		5.2	□□□□□ -1.58
CDC48	YDL126C	YGR021W	P53212	290 aa		5.2	□□□□□ -1.58
CDC48	YDL126C	YRF1-4	O13559	1382 aa		5.2	□□□□□ -1.58
CDC48	YDL126C	SIR4	P11978	1358 aa		5.2	□□□□□ -1.58
CDC48	YDL126C	CCP1	P00431	361 aa		5.2	□□□□□ -1.58
CDC48	YDL126C	HVG1	P0CE11	249 aa		5.2	□□□□□ -1.58
CDC48	YDL126C	RAD4	P14736	754 aa		5.2	□□□□□ -1.58
CDC48	YDL126C	SEA4	P38164	1038 aa		5.2	□□□□□ -1.58
CDC48	YDL126C	THI22	Q06490	572 aa		5.2	□□□□□ -1.58
CDC48	YDL126C	YOR296W	Q08748	1289 aa		5.2	□□□□□ -1.58
CDC48	YDL126C	OXR1	Q08952	273 aa		5.2	□□□□□ -1.58
CDC48	YDL126C	DYS1	P38791	387 aa		5.19	□□□□□ -1.58
CDC48	YDL126C	MRPS18	P42847	217 aa		5.19	□□□□□ -1.58
CDC48	YDL126C	SMC3	P47037	1230 aa		5.19	□□□□□ -1.58
CDC48	YDL126C	MSN5	P52918	1224 aa		5.19	□□□□□ -1.58
CDC48	YDL126C	TYW3	P53177	273 aa		5.19	□□□□□ -1.58
CDC48	YDL126C	ENT2	Q05785	613 aa		5.19	□□□□□ -1.58
CDC48	YDL126C	MET32	Q12041	191 aa		5.19	□□□□□ -1.58
CDC48	YDL126C	EDE1	P34216	1381 aa		5.19	□□□□□ -1.58
CDC48	YDL126C	ERR1	P0CX10	437 aa		5.19	□□□□□ -1.58
CDC48	YDL126C	ERR2	P0CX11	437 aa		5.19	□□□□□ -1.58
CDC48	YDL126C	PRI2	P20457	528 aa		5.19	□□□□□ -1.58
CDC48	YDL126C	CHL1	P22516	861 aa	Predicted RBP	5.19	□□□□□ -1.58
CDC48	YDL126C	BYE1	P36106	594 aa		5.19	□□□□□ -1.58
CDC48	YDL126C	AKL1	P38080	1108 aa	Known RBP	5.19	□□□□□ -1.58
CDC48	YDL126C	YGL081W	P53156	320 aa		5.19	□□□□□ -1.58
CDC48	YDL126C	ESF2	P53743	316 aa	Known RBP	5.19	□□□□□ -1.58
CDC48	YDL126C	TBS1	P38114	1094 aa		5.18	□□□□□ -1.58
CDC48	YDL126C	VID27	P40157	782 aa		5.18	□□□□□ -1.58
CDC48	YDL126C	HEF3	P53978	1044 aa	Known RBP	5.18	□□□□□ -1.58
CDC48	YDL126C	NOG1	Q02892	647 aa	Known RBP	5.18	□□□□□ -1.58
CDC48	YDL126C	CEF1	Q03654	590 aa	Predicted RBP	5.18	□□□□□ -1.58
CDC48	YDL126C	ESC2	Q06340	456 aa		5.18	□□□□□ -1.58
CDC48	YDL126C	TY1B-A	O13527	1196 aa	Known RBP	5.18	□□□□□ -1.58
CDC48	YDL126C	PRP45	P28004	379 aa	Predicted RBP	5.18	□□□□□ -1.58
CDC48	YDL126C	MRF1	P30775	413 aa	Predicted RBP	5.18	□□□□□ -1.58
CDC48	YDL126C	RSP5	P39940	809 aa	Known RBP	5.18	□□□□□ -1.58
CDC48	YDL126C	CLA4	P48562	842 aa		5.18	□□□□□ -1.58
CDC48	YDL126C	RRI2	Q12348	645 aa		5.18	□□□□□ -1.58
CDC48	YDL126C	NOP58	Q12499	511 aa	Known RBP	5.18	□□□□□ -1.58
CDC48	YDL126C	LEU1	P07264	779 aa	Known RBP	5.17	□□□□□ -1.58
CDC48	YDL126C	PYC2	P32327	1180 aa	Known RBP	5.17	□□□□□ -1.58
CDC48	YDL126C	GIP1	P38229	639 aa		5.17	□□□□□ -1.58
CDC48	YDL126C	RTT109	Q07794	436 aa		5.17	□□□□□ -1.58
CDC48	YDL126C	FLC1	Q08967	793 aa		5.17	□□□□□ -1.58
CDC48	YDL126C	SLM3	Q12093	417 aa		5.17	□□□□□ -1.58
CDC48	YDL126C	CMR1	Q12510	522 aa	Known RBP	5.17	□□□□□ -1.58
CDC48	YDL126C	SEC23	P15303	768 aa	Known RBP	5.17	□□□□□ -1.58
CDC48	YDL126C	SRP54	P20424	541 aa	Known RBP	5.17	□□□□□ -1.58
CDC48	YDL126C	OPI1	P21957	404 aa		5.17	□□□□□ -1.58
CDC48	YDL126C	KAP122	P32767	1081 aa		5.17	□□□□□ -1.58
CDC48	YDL126C	SEC9	P40357	651 aa		5.17	□□□□□ -1.58
CDC48	YDL126C	YIL165C	P40446	119 aa		5.17	□□□□□ -1.58
CDC48	YDL126C	MSH4	P40965	878 aa	Predicted RBP	5.17	□□□□□ -1.58
CDC48	YDL126C	PKH1	Q03407	766 aa		5.17	□□□□□ -1.58
CDC48	YDL126C	HDA2	Q06629	674 aa		5.17	□□□□□ -1.58
CDC48	YDL126C	RTT10	Q08924	1013 aa		5.17	□□□□□ -1.58
CDC48	YDL126C	REC8	Q12188	680 aa		5.17	□□□□□ -1.58
CDC48	YDL126C	YGR161W-C	Q3E744	92 aa		5.17	□□□□□ -1.58
CDC48	YDL126C	MSB3	P48566	633 aa	Predicted RBP	5.16	□□□□□ -1.58
CDC48	YDL126C	DSD1	P53095	428 aa		5.16	□□□□□ -1.58
CDC48	YDL126C	CBF5	P33322	483 aa	Known RBP RIP-Chip data	5.16	□□□□□ -1.58	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 36.7 ms