Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.85■□□□□ 0.61
DKK3Q9UBP4 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18.85■□□□□ 0.61
DKK3Q9UBP4 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.85■□□□□ 0.61
DKK3Q9UBP4 HOMER2P1-201ENST00000455653 964 ntBASIC18.85■□□□□ 0.61
DKK3Q9UBP4 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.85■□□□□ 0.61
DKK3Q9UBP4 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.85■□□□□ 0.61
DKK3Q9UBP4 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.85■□□□□ 0.61
DKK3Q9UBP4 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.85■□□□□ 0.61
DKK3Q9UBP4 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
DKK3Q9UBP4 AC068587.9-201ENST00000641814 219 ntBASIC18.85■□□□□ 0.61
DKK3Q9UBP4 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.85■□□□□ 0.61
DKK3Q9UBP4 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.85■□□□□ 0.61
DKK3Q9UBP4 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.85■□□□□ 0.61
DKK3Q9UBP4 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
DKK3Q9UBP4 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.85■□□□□ 0.61
DKK3Q9UBP4 AL161938.1-201ENST00000569833 2180 ntBASIC18.85■□□□□ 0.61
DKK3Q9UBP4 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
DKK3Q9UBP4 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.85■□□□□ 0.61
DKK3Q9UBP4 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
DKK3Q9UBP4 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
DKK3Q9UBP4 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
DKK3Q9UBP4 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
DKK3Q9UBP4 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.84■□□□□ 0.61
DKK3Q9UBP4 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
DKK3Q9UBP4 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
DKK3Q9UBP4 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
DKK3Q9UBP4 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
DKK3Q9UBP4 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
DKK3Q9UBP4 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
DKK3Q9UBP4 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.84■□□□□ 0.61
DKK3Q9UBP4 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.84■□□□□ 0.61
DKK3Q9UBP4 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
DKK3Q9UBP4 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
DKK3Q9UBP4 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
DKK3Q9UBP4 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
DKK3Q9UBP4 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
DKK3Q9UBP4 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.84■□□□□ 0.61
DKK3Q9UBP4 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.84■□□□□ 0.61
DKK3Q9UBP4 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.84■□□□□ 0.61
DKK3Q9UBP4 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
DKK3Q9UBP4 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
DKK3Q9UBP4 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.84■□□□□ 0.61
DKK3Q9UBP4 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.84■□□□□ 0.61
DKK3Q9UBP4 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.83■□□□□ 0.61
DKK3Q9UBP4 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.83■□□□□ 0.61
DKK3Q9UBP4 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.83■□□□□ 0.61
DKK3Q9UBP4 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.83■□□□□ 0.61
DKK3Q9UBP4 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
DKK3Q9UBP4 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.83■□□□□ 0.61
DKK3Q9UBP4 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
DKK3Q9UBP4 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
DKK3Q9UBP4 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
DKK3Q9UBP4 AC008556.1-201ENST00000610908 2040 ntBASIC18.83■□□□□ 0.61
DKK3Q9UBP4 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
DKK3Q9UBP4 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
DKK3Q9UBP4 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.83■□□□□ 0.61
DKK3Q9UBP4 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
DKK3Q9UBP4 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
DKK3Q9UBP4 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
DKK3Q9UBP4 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
DKK3Q9UBP4 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
DKK3Q9UBP4 MIR564-202ENST00000385049 94 ntBASIC18.83■□□□□ 0.6
DKK3Q9UBP4 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
DKK3Q9UBP4 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
DKK3Q9UBP4 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
DKK3Q9UBP4 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
DKK3Q9UBP4 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
DKK3Q9UBP4 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
DKK3Q9UBP4 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
DKK3Q9UBP4 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
DKK3Q9UBP4 KRT18P35-201ENST00000510488 1269 ntBASIC18.83■□□□□ 0.6
DKK3Q9UBP4 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.83■□□□□ 0.6
DKK3Q9UBP4 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.83■□□□□ 0.6
DKK3Q9UBP4 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
DKK3Q9UBP4 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC18.83■□□□□ 0.6
DKK3Q9UBP4 AL445228.2-201ENST00000605589 952 ntBASIC18.83■□□□□ 0.6
DKK3Q9UBP4 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
DKK3Q9UBP4 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.6
DKK3Q9UBP4 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
DKK3Q9UBP4 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
DKK3Q9UBP4 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.83■□□□□ 0.6
DKK3Q9UBP4 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
DKK3Q9UBP4 KRT8P7-201ENST00000533003 1432 ntBASIC18.83■□□□□ 0.6
DKK3Q9UBP4 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
DKK3Q9UBP4 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.82■□□□□ 0.6
DKK3Q9UBP4 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
DKK3Q9UBP4 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
DKK3Q9UBP4 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
DKK3Q9UBP4 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
DKK3Q9UBP4 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.82■□□□□ 0.6
DKK3Q9UBP4 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
DKK3Q9UBP4 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC18.82■□□□□ 0.6
DKK3Q9UBP4 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
DKK3Q9UBP4 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.82■□□□□ 0.6
DKK3Q9UBP4 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
DKK3Q9UBP4 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC18.82■□□□□ 0.6
DKK3Q9UBP4 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
DKK3Q9UBP4 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
DKK3Q9UBP4 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.82■□□□□ 0.6
DKK3Q9UBP4 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms