Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
MMP28Q9H239 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC16.57■□□□□ 0.24
MMP28Q9H239 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MMP28Q9H239 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MMP28Q9H239 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MMP28Q9H239 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC16.57■□□□□ 0.24
MMP28Q9H239 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
MMP28Q9H239 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC16.57■□□□□ 0.24
MMP28Q9H239 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MMP28Q9H239 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
MMP28Q9H239 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC16.57■□□□□ 0.24
MMP28Q9H239 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC16.57■□□□□ 0.24
MMP28Q9H239 AC093787.1-201ENST00000450396 207 ntBASIC16.57■□□□□ 0.24
MMP28Q9H239 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC16.57■□□□□ 0.24
MMP28Q9H239 AC083906.2-201ENST00000511578 360 ntBASIC16.57■□□□□ 0.24
MMP28Q9H239 AC105036.2-201ENST00000569468 176 ntBASIC16.57■□□□□ 0.24
MMP28Q9H239 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MMP28Q9H239 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
MMP28Q9H239 CYP2T3P-201ENST00000601990 817 ntBASIC16.57■□□□□ 0.24
MMP28Q9H239 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
MMP28Q9H239 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
MMP28Q9H239 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
MMP28Q9H239 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
MMP28Q9H239 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MMP28Q9H239 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
MMP28Q9H239 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC16.57■□□□□ 0.24
MMP28Q9H239 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MMP28Q9H239 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
MMP28Q9H239 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MMP28Q9H239 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC16.56■□□□□ 0.24
MMP28Q9H239 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
MMP28Q9H239 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.56■□□□□ 0.24
MMP28Q9H239 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
MMP28Q9H239 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC16.56■□□□□ 0.24
MMP28Q9H239 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC16.56■□□□□ 0.24
MMP28Q9H239 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC16.56■□□□□ 0.24
MMP28Q9H239 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MMP28Q9H239 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MMP28Q9H239 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
MMP28Q9H239 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MMP28Q9H239 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
MMP28Q9H239 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MMP28Q9H239 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MMP28Q9H239 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC16.56■□□□□ 0.24
MMP28Q9H239 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MMP28Q9H239 KRT18P68-201ENST00000392293 1000 ntBASIC16.56■□□□□ 0.24
MMP28Q9H239 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC16.56■□□□□ 0.24
MMP28Q9H239 APTR-205ENST00000447009 902 ntTSL 2 BASIC16.56■□□□□ 0.24
MMP28Q9H239 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MMP28Q9H239 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MMP28Q9H239 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
MMP28Q9H239 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
MMP28Q9H239 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC16.56■□□□□ 0.24
MMP28Q9H239 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MMP28Q9H239 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MMP28Q9H239 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
MMP28Q9H239 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MMP28Q9H239 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MMP28Q9H239 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
MMP28Q9H239 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MMP28Q9H239 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MMP28Q9H239 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
MMP28Q9H239 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MMP28Q9H239 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
MMP28Q9H239 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MMP28Q9H239 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC16.55■□□□□ 0.24
MMP28Q9H239 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MMP28Q9H239 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
MMP28Q9H239 GCK-205ENST00000437084 1385 ntTSL 5 BASIC16.55■□□□□ 0.24
MMP28Q9H239 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MMP28Q9H239 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC16.55■□□□□ 0.24
MMP28Q9H239 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MMP28Q9H239 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MMP28Q9H239 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MMP28Q9H239 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MMP28Q9H239 ISCU-212ENST00000547005 795 ntTSL 3 BASIC16.55■□□□□ 0.24
MMP28Q9H239 OAS3-207ENST00000551007 998 ntTSL 2 BASIC16.55■□□□□ 0.24
MMP28Q9H239 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC16.55■□□□□ 0.24
MMP28Q9H239 AC105020.6-201ENST00000621523 1217 ntBASIC16.55■□□□□ 0.24
MMP28Q9H239 GAMT-205ENST00000640762 751 ntTSL 5 BASIC16.55■□□□□ 0.24
MMP28Q9H239 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
MMP28Q9H239 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
MMP28Q9H239 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MMP28Q9H239 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC16.55■□□□□ 0.24
MMP28Q9H239 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MMP28Q9H239 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
MMP28Q9H239 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
MMP28Q9H239 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MMP28Q9H239 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MMP28Q9H239 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.54■□□□□ 0.24
MMP28Q9H239 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.54■□□□□ 0.24
MMP28Q9H239 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
MMP28Q9H239 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MMP28Q9H239 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
MMP28Q9H239 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MMP28Q9H239 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
MMP28Q9H239 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
MMP28Q9H239 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MMP28Q9H239 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
MMP28Q9H239 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 119.9 ms