Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
LINC00477Q96M19 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00477Q96M19 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00477Q96M19 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC14.09□□□□□ -0.15
LINC00477Q96M19 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00477Q96M19 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC14.09□□□□□ -0.15
LINC00477Q96M19 AC026366.1-201ENST00000488803 879 ntBASIC14.09□□□□□ -0.15
LINC00477Q96M19 AC092666.2-201ENST00000613287 246 ntBASIC14.09□□□□□ -0.15
LINC00477Q96M19 AC131212.4-201ENST00000623606 975 ntBASIC14.09□□□□□ -0.15
LINC00477Q96M19 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC14.09□□□□□ -0.15
LINC00477Q96M19 MYC-208ENST00000641036 567 ntBASIC14.09□□□□□ -0.15
LINC00477Q96M19 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00477Q96M19 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC14.09□□□□□ -0.15
LINC00477Q96M19 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00477Q96M19 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00477Q96M19 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC14.09□□□□□ -0.15
LINC00477Q96M19 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
LINC00477Q96M19 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
LINC00477Q96M19 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00477Q96M19 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC14.09□□□□□ -0.15
LINC00477Q96M19 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC14.09□□□□□ -0.15
LINC00477Q96M19 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00477Q96M19 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
LINC00477Q96M19 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC14.09□□□□□ -0.15
LINC00477Q96M19 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00477Q96M19 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
LINC00477Q96M19 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00477Q96M19 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
LINC00477Q96M19 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC14.09□□□□□ -0.15
LINC00477Q96M19 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00477Q96M19 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC14.09□□□□□ -0.15
LINC00477Q96M19 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00477Q96M19 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00477Q96M19 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
LINC00477Q96M19 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC14.08□□□□□ -0.15
LINC00477Q96M19 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.15
LINC00477Q96M19 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC14.08□□□□□ -0.15
LINC00477Q96M19 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
LINC00477Q96M19 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LINC00477Q96M19 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
LINC00477Q96M19 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
LINC00477Q96M19 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
LINC00477Q96M19 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
LINC00477Q96M19 HEIH-201ENST00000623091 1652 ntBASIC14.08□□□□□ -0.16
LINC00477Q96M19 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
LINC00477Q96M19 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LINC00477Q96M19 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
LINC00477Q96M19 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
LINC00477Q96M19 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
LINC00477Q96M19 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC14.08□□□□□ -0.16
LINC00477Q96M19 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC14.08□□□□□ -0.16
LINC00477Q96M19 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC14.08□□□□□ -0.16
LINC00477Q96M19 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC14.08□□□□□ -0.16
LINC00477Q96M19 AC069544.1-201ENST00000609399 999 ntBASIC14.08□□□□□ -0.16
LINC00477Q96M19 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LINC00477Q96M19 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
LINC00477Q96M19 RCC2P6-201ENST00000526625 1557 ntBASIC14.08□□□□□ -0.16
LINC00477Q96M19 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LINC00477Q96M19 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
LINC00477Q96M19 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
LINC00477Q96M19 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
LINC00477Q96M19 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
LINC00477Q96M19 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC14.08□□□□□ -0.16
LINC00477Q96M19 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC14.08□□□□□ -0.16
LINC00477Q96M19 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC14.08□□□□□ -0.16
LINC00477Q96M19 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC14.08□□□□□ -0.16
LINC00477Q96M19 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
LINC00477Q96M19 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LINC00477Q96M19 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
LINC00477Q96M19 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LINC00477Q96M19 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LINC00477Q96M19 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LINC00477Q96M19 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
LINC00477Q96M19 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LINC00477Q96M19 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LINC00477Q96M19 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LINC00477Q96M19 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC14.07□□□□□ -0.16
LINC00477Q96M19 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC14.07□□□□□ -0.16
LINC00477Q96M19 AL355802.2-201ENST00000402069 882 ntBASIC14.07□□□□□ -0.16
LINC00477Q96M19 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
LINC00477Q96M19 PTPA-216ENST00000432651 857 ntTSL 2 BASIC14.07□□□□□ -0.16
LINC00477Q96M19 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
LINC00477Q96M19 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC14.07□□□□□ -0.16
LINC00477Q96M19 PRSS44-201ENST00000515154 1146 ntBASIC14.07□□□□□ -0.16
LINC00477Q96M19 AC090192.1-201ENST00000517740 490 ntBASIC14.07□□□□□ -0.16
LINC00477Q96M19 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC14.07□□□□□ -0.16
LINC00477Q96M19 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC14.07□□□□□ -0.16
LINC00477Q96M19 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LINC00477Q96M19 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC14.07□□□□□ -0.16
LINC00477Q96M19 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
LINC00477Q96M19 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
LINC00477Q96M19 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC14.07□□□□□ -0.16
LINC00477Q96M19 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LINC00477Q96M19 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LINC00477Q96M19 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
LINC00477Q96M19 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LINC00477Q96M19 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LINC00477Q96M19 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
LINC00477Q96M19 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC14.07□□□□□ -0.16
LINC00477Q96M19 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms