Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HDDC3Q8N4P3 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
HDDC3Q8N4P3 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
HDDC3Q8N4P3 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.86■□□□□ 0.61
HDDC3Q8N4P3 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
HDDC3Q8N4P3 FEM1AP3-201ENST00000403722 1741 ntBASIC18.86■□□□□ 0.61
HDDC3Q8N4P3 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 AL512353.2-201ENST00000448759 1962 ntBASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 RASA4DP-201ENST00000460726 1199 ntBASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 PRELID1P1-202ENST00000567272 903 ntBASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.85■□□□□ 0.61
HDDC3Q8N4P3 RCC2P3-201ENST00000418112 1537 ntBASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 MIR3652-201ENST00000579335 131 ntBASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 IRX1P1-201ENST00000438849 1838 ntBASIC18.84■□□□□ 0.61
HDDC3Q8N4P3 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HDDC3Q8N4P3 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HDDC3Q8N4P3 AFG3L1P-217ENST00000557444 2447 ntBASIC18.83■□□□□ 0.61
HDDC3Q8N4P3 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
HDDC3Q8N4P3 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HDDC3Q8N4P3 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.83■□□□□ 0.61
HDDC3Q8N4P3 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.83■□□□□ 0.61
HDDC3Q8N4P3 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HDDC3Q8N4P3 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HDDC3Q8N4P3 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HDDC3Q8N4P3 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
HDDC3Q8N4P3 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.83■□□□□ 0.6
HDDC3Q8N4P3 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.83■□□□□ 0.6
HDDC3Q8N4P3 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.83■□□□□ 0.6
HDDC3Q8N4P3 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HDDC3Q8N4P3 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HDDC3Q8N4P3 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.83■□□□□ 0.6
HDDC3Q8N4P3 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.83■□□□□ 0.6
HDDC3Q8N4P3 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HDDC3Q8N4P3 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HDDC3Q8N4P3 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.83■□□□□ 0.6
HDDC3Q8N4P3 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.83■□□□□ 0.6
HDDC3Q8N4P3 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
HDDC3Q8N4P3 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HDDC3Q8N4P3 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDDC3Q8N4P3 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
HDDC3Q8N4P3 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDDC3Q8N4P3 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDDC3Q8N4P3 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDDC3Q8N4P3 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDDC3Q8N4P3 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.82■□□□□ 0.6
HDDC3Q8N4P3 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDDC3Q8N4P3 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HDDC3Q8N4P3 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms