Protein–RNA interactions for Protein: P56277

CMC4, Cx9C motif-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 68 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMC4P56277 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CMC4P56277 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
CMC4P56277 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CMC4P56277 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CMC4P56277 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CMC4P56277 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC14.01□□□□□ -0.17
CMC4P56277 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
CMC4P56277 AL137013.1-201ENST00000432946 1228 ntBASIC14.01□□□□□ -0.17
CMC4P56277 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC14.01□□□□□ -0.17
CMC4P56277 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CMC4P56277 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC14.01□□□□□ -0.17
CMC4P56277 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC14.01□□□□□ -0.17
CMC4P56277 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC14.01□□□□□ -0.17
CMC4P56277 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC14.01□□□□□ -0.17
CMC4P56277 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC14.01□□□□□ -0.17
CMC4P56277 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CMC4P56277 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CMC4P56277 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CMC4P56277 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CMC4P56277 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC14.01□□□□□ -0.17
CMC4P56277 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CMC4P56277 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC14.01□□□□□ -0.17
CMC4P56277 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CMC4P56277 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC14.01□□□□□ -0.17
CMC4P56277 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC14.01□□□□□ -0.17
CMC4P56277 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC14.01□□□□□ -0.17
CMC4P56277 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CMC4P56277 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CMC4P56277 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CMC4P56277 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CMC4P56277 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CMC4P56277 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CMC4P56277 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC14□□□□□ -0.17
CMC4P56277 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
CMC4P56277 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
CMC4P56277 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
CMC4P56277 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC14□□□□□ -0.17
CMC4P56277 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
CMC4P56277 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
CMC4P56277 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CMC4P56277 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC14□□□□□ -0.17
CMC4P56277 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC14□□□□□ -0.17
CMC4P56277 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC14□□□□□ -0.17
CMC4P56277 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
CMC4P56277 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC14□□□□□ -0.17
CMC4P56277 PRR31-201ENST00000371629 978 ntTSL 2 BASIC14□□□□□ -0.17
CMC4P56277 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC14□□□□□ -0.17
CMC4P56277 GRAMD4P1-201ENST00000435181 1110 ntBASIC14□□□□□ -0.17
CMC4P56277 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
CMC4P56277 AC009065.1-201ENST00000564055 1225 ntBASIC14□□□□□ -0.17
CMC4P56277 WWOX-216ENST00000569818 525 ntBASIC14□□□□□ -0.17
CMC4P56277 MIR3180-5-201ENST00000583743 153 ntBASIC14□□□□□ -0.17
CMC4P56277 AC012306.2-201ENST00000609350 630 ntBASIC14□□□□□ -0.17
CMC4P56277 AC083906.6-201ENST00000641366 219 ntBASIC14□□□□□ -0.17
CMC4P56277 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC14□□□□□ -0.17
CMC4P56277 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
CMC4P56277 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CMC4P56277 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
CMC4P56277 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
CMC4P56277 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
CMC4P56277 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CMC4P56277 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CMC4P56277 KRT8P9-201ENST00000558927 1449 ntBASIC13.99□□□□□ -0.17
CMC4P56277 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CMC4P56277 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC13.99□□□□□ -0.17
CMC4P56277 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CMC4P56277 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC13.99□□□□□ -0.17
CMC4P56277 ENSA-205ENST00000361532 792 ntTSL 2 BASIC13.99□□□□□ -0.17
CMC4P56277 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CMC4P56277 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CMC4P56277 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CMC4P56277 SLC25A3P1-201ENST00000443844 931 ntBASIC13.99□□□□□ -0.17
CMC4P56277 ECEL1P2-202ENST00000465689 757 ntBASIC13.99□□□□□ -0.17
CMC4P56277 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CMC4P56277 ARL16-209ENST00000573715 763 ntTSL 3 BASIC13.99□□□□□ -0.17
CMC4P56277 ARL16-211ENST00000576135 694 ntTSL 3 BASIC13.99□□□□□ -0.17
CMC4P56277 NEK4P2-201ENST00000580004 1012 ntBASIC13.99□□□□□ -0.17
CMC4P56277 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC13.99□□□□□ -0.17
CMC4P56277 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CMC4P56277 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
CMC4P56277 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CMC4P56277 AC116562.4-201ENST00000641316 2276 ntBASIC13.99□□□□□ -0.17
CMC4P56277 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CMC4P56277 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CMC4P56277 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CMC4P56277 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CMC4P56277 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC13.99□□□□□ -0.17
CMC4P56277 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC13.99□□□□□ -0.17
CMC4P56277 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CMC4P56277 AC007952.6-201ENST00000573168 2673 ntBASIC13.98□□□□□ -0.17
CMC4P56277 AC003957.1-201ENST00000625108 2673 ntBASIC13.98□□□□□ -0.17
CMC4P56277 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
CMC4P56277 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CMC4P56277 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
CMC4P56277 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CMC4P56277 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CMC4P56277 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
CMC4P56277 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC13.98□□□□□ -0.17
CMC4P56277 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
CMC4P56277 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms