Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
GFRA1P56159 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
GFRA1P56159 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
GFRA1P56159 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
GFRA1P56159 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC16.84■□□□□ 0.29
GFRA1P56159 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
GFRA1P56159 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
GFRA1P56159 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
GFRA1P56159 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
GFRA1P56159 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
GFRA1P56159 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
GFRA1P56159 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
GFRA1P56159 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
GFRA1P56159 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
GFRA1P56159 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
GFRA1P56159 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
GFRA1P56159 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.83■□□□□ 0.28
GFRA1P56159 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
GFRA1P56159 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
GFRA1P56159 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
GFRA1P56159 GRAMD4P1-201ENST00000435181 1110 ntBASIC16.83■□□□□ 0.28
GFRA1P56159 ELP6-205ENST00000439305 880 ntTSL 2 BASIC16.83■□□□□ 0.28
GFRA1P56159 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC16.83■□□□□ 0.28
GFRA1P56159 AL359075.1-203ENST00000462729 1002 ntBASIC16.83■□□□□ 0.28
GFRA1P56159 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.83■□□□□ 0.28
GFRA1P56159 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.83■□□□□ 0.28
GFRA1P56159 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.83■□□□□ 0.28
GFRA1P56159 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
GFRA1P56159 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
GFRA1P56159 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
GFRA1P56159 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.83■□□□□ 0.28
GFRA1P56159 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
GFRA1P56159 AC087388.1-201ENST00000571370 1112 ntBASIC16.83■□□□□ 0.28
GFRA1P56159 HOXB1-202ENST00000577092 1414 ntBASIC16.83■□□□□ 0.28
GFRA1P56159 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.83■□□□□ 0.28
GFRA1P56159 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC16.83■□□□□ 0.28
GFRA1P56159 AC024243.1-201ENST00000609234 778 ntBASIC16.83■□□□□ 0.28
GFRA1P56159 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC16.83■□□□□ 0.28
GFRA1P56159 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC16.83■□□□□ 0.28
GFRA1P56159 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC16.83■□□□□ 0.28
GFRA1P56159 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
GFRA1P56159 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
GFRA1P56159 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
GFRA1P56159 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
GFRA1P56159 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
GFRA1P56159 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
GFRA1P56159 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC16.82■□□□□ 0.28
GFRA1P56159 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
GFRA1P56159 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC16.82■□□□□ 0.28
GFRA1P56159 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC16.82■□□□□ 0.28
GFRA1P56159 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
GFRA1P56159 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
GFRA1P56159 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
GFRA1P56159 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
GFRA1P56159 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
GFRA1P56159 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
GFRA1P56159 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC16.82■□□□□ 0.28
GFRA1P56159 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC16.82■□□□□ 0.28
GFRA1P56159 AIRN-201ENST00000601203 4374 ntBASIC16.82■□□□□ 0.28
GFRA1P56159 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
GFRA1P56159 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
GFRA1P56159 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
GFRA1P56159 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC16.82■□□□□ 0.28
GFRA1P56159 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC16.82■□□□□ 0.28
GFRA1P56159 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
GFRA1P56159 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
GFRA1P56159 KRT18P38-201ENST00000449496 1282 ntBASIC16.82■□□□□ 0.28
GFRA1P56159 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC16.82■□□□□ 0.28
GFRA1P56159 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC16.82■□□□□ 0.28
GFRA1P56159 SEC1P-202ENST00000473944 940 ntBASIC16.82■□□□□ 0.28
GFRA1P56159 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC16.82■□□□□ 0.28
GFRA1P56159 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
GFRA1P56159 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC16.82■□□□□ 0.28
GFRA1P56159 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.82■□□□□ 0.28
GFRA1P56159 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.82■□□□□ 0.28
GFRA1P56159 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.82■□□□□ 0.28
GFRA1P56159 AC083906.6-201ENST00000641366 219 ntBASIC16.82■□□□□ 0.28
GFRA1P56159 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
GFRA1P56159 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC16.82■□□□□ 0.28
GFRA1P56159 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
GFRA1P56159 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC16.82■□□□□ 0.28
GFRA1P56159 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
GFRA1P56159 USP39-202ENST00000409025 1946 ntTSL 5 BASIC16.82■□□□□ 0.28
GFRA1P56159 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
GFRA1P56159 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
GFRA1P56159 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
GFRA1P56159 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC16.82■□□□□ 0.28
GFRA1P56159 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC16.82■□□□□ 0.28
GFRA1P56159 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
GFRA1P56159 NFYC-AS1-201ENST00000606277 1687 ntBASIC16.81■□□□□ 0.28
GFRA1P56159 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
GFRA1P56159 AC034236.2-201ENST00000606662 1610 ntBASIC16.81■□□□□ 0.28
GFRA1P56159 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
GFRA1P56159 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
GFRA1P56159 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC16.81■□□□□ 0.28
GFRA1P56159 MTMR9LP-203ENST00000426597 1545 ntBASIC16.81■□□□□ 0.28
GFRA1P56159 MED25-212ENST00000618715 1467 ntTSL 5 BASIC16.81■□□□□ 0.28
GFRA1P56159 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
GFRA1P56159 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
GFRA1P56159 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms