Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PKNOX1P55347 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.44■□□□□ 0.54
PKNOX1P55347 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PKNOX1P55347 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
PKNOX1P55347 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
PKNOX1P55347 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.44■□□□□ 0.54
PKNOX1P55347 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
PKNOX1P55347 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PKNOX1P55347 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PKNOX1P55347 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.44■□□□□ 0.54
PKNOX1P55347 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
PKNOX1P55347 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PKNOX1P55347 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.44■□□□□ 0.54
PKNOX1P55347 HLA-L-209ENST00000420110 1011 ntBASIC18.44■□□□□ 0.54
PKNOX1P55347 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.44■□□□□ 0.54
PKNOX1P55347 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.44■□□□□ 0.54
PKNOX1P55347 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.44■□□□□ 0.54
PKNOX1P55347 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PKNOX1P55347 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.44■□□□□ 0.54
PKNOX1P55347 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.44■□□□□ 0.54
PKNOX1P55347 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PKNOX1P55347 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.44■□□□□ 0.54
PKNOX1P55347 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PKNOX1P55347 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PKNOX1P55347 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.44■□□□□ 0.54
PKNOX1P55347 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
PKNOX1P55347 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PKNOX1P55347 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PKNOX1P55347 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
PKNOX1P55347 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.43■□□□□ 0.54
PKNOX1P55347 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PKNOX1P55347 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PKNOX1P55347 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.43■□□□□ 0.54
PKNOX1P55347 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
PKNOX1P55347 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PKNOX1P55347 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.43■□□□□ 0.54
PKNOX1P55347 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PKNOX1P55347 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.43■□□□□ 0.54
PKNOX1P55347 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.43■□□□□ 0.54
PKNOX1P55347 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.43■□□□□ 0.54
PKNOX1P55347 RNA5SP413-201ENST00000516373 109 ntBASIC18.43■□□□□ 0.54
PKNOX1P55347 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
PKNOX1P55347 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
PKNOX1P55347 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PKNOX1P55347 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PKNOX1P55347 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PKNOX1P55347 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.43■□□□□ 0.54
PKNOX1P55347 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PKNOX1P55347 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PKNOX1P55347 KRT8P41-201ENST00000533985 1514 ntBASIC18.43■□□□□ 0.54
PKNOX1P55347 ANO7L1-203ENST00000602586 1720 ntBASIC18.43■□□□□ 0.54
PKNOX1P55347 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.43■□□□□ 0.54
PKNOX1P55347 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PKNOX1P55347 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.42■□□□□ 0.54
PKNOX1P55347 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.42■□□□□ 0.54
PKNOX1P55347 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
PKNOX1P55347 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PKNOX1P55347 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
PKNOX1P55347 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
PKNOX1P55347 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PKNOX1P55347 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
PKNOX1P55347 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PKNOX1P55347 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.42■□□□□ 0.54
PKNOX1P55347 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PKNOX1P55347 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
PKNOX1P55347 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.42■□□□□ 0.54
PKNOX1P55347 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18.42■□□□□ 0.54
PKNOX1P55347 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.42■□□□□ 0.54
PKNOX1P55347 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.42■□□□□ 0.54
PKNOX1P55347 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PKNOX1P55347 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
PKNOX1P55347 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
PKNOX1P55347 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PKNOX1P55347 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PKNOX1P55347 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
PKNOX1P55347 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PKNOX1P55347 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
PKNOX1P55347 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
PKNOX1P55347 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
PKNOX1P55347 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.41■□□□□ 0.54
PKNOX1P55347 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.41■□□□□ 0.54
PKNOX1P55347 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PKNOX1P55347 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
PKNOX1P55347 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
PKNOX1P55347 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PKNOX1P55347 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
PKNOX1P55347 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.41■□□□□ 0.54
PKNOX1P55347 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PKNOX1P55347 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.41■□□□□ 0.54
PKNOX1P55347 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.41■□□□□ 0.54
PKNOX1P55347 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PKNOX1P55347 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
PKNOX1P55347 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.41■□□□□ 0.54
PKNOX1P55347 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PKNOX1P55347 KRT16P5-201ENST00000455284 522 ntBASIC18.41■□□□□ 0.54
PKNOX1P55347 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.41■□□□□ 0.54
PKNOX1P55347 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PKNOX1P55347 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
PKNOX1P55347 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.41■□□□□ 0.54
PKNOX1P55347 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms