Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC23.68■■□□□ 1.38
COL5A3P25940 ABR-217ENST00000572441 563 ntTSL 4 BASIC23.68■■□□□ 1.38
COL5A3P25940 CCNC-219ENST00000627680 896 ntTSL 5 BASIC23.68■■□□□ 1.38
COL5A3P25940 AC068587.9-201ENST00000641814 219 ntBASIC23.68■■□□□ 1.38
COL5A3P25940 UBQLN4P1-201ENST00000461599 1801 ntBASIC23.68■■□□□ 1.38
COL5A3P25940 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
COL5A3P25940 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL5A3P25940 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL5A3P25940 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC23.68■■□□□ 1.38
COL5A3P25940 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL5A3P25940 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL5A3P25940 MIR564-202ENST00000385049 94 ntBASIC23.67■■□□□ 1.38
COL5A3P25940 MIR574-201ENST00000385209 96 ntBASIC23.67■■□□□ 1.38
COL5A3P25940 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC23.67■■□□□ 1.38
COL5A3P25940 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
COL5A3P25940 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
COL5A3P25940 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL5A3P25940 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
COL5A3P25940 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC23.67■■□□□ 1.38
COL5A3P25940 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC23.67■■□□□ 1.38
COL5A3P25940 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC23.67■■□□□ 1.38
COL5A3P25940 KRT8P50-201ENST00000562022 1438 ntBASIC23.67■■□□□ 1.38
COL5A3P25940 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
COL5A3P25940 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL5A3P25940 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL5A3P25940 DFFB-203ENST00000341385 572 ntTSL 5 BASIC23.67■■□□□ 1.38
COL5A3P25940 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL5A3P25940 AP000593.1-201ENST00000393668 712 ntBASIC23.67■■□□□ 1.38
COL5A3P25940 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC23.67■■□□□ 1.38
COL5A3P25940 GUSBP12-201ENST00000513727 720 ntBASIC23.67■■□□□ 1.38
COL5A3P25940 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC23.67■■□□□ 1.38
COL5A3P25940 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC23.67■■□□□ 1.38
COL5A3P25940 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL5A3P25940 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC23.66■■□□□ 1.38
COL5A3P25940 Z98044.1-201ENST00000632503 1764 ntBASIC23.66■■□□□ 1.38
COL5A3P25940 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL5A3P25940 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC23.66■■□□□ 1.38
COL5A3P25940 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC23.66■■□□□ 1.38
COL5A3P25940 AC125437.2-201ENST00000625180 2167 ntBASIC23.66■■□□□ 1.38
COL5A3P25940 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL5A3P25940 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL5A3P25940 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL5A3P25940 HES2-202ENST00000377836 507 ntTSL 2 BASIC23.66■■□□□ 1.38
COL5A3P25940 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC23.66■■□□□ 1.38
COL5A3P25940 AC008608.2-201ENST00000606089 416 ntBASIC23.66■■□□□ 1.38
COL5A3P25940 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC23.66■■□□□ 1.38
COL5A3P25940 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC23.66■■□□□ 1.38
COL5A3P25940 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
COL5A3P25940 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL5A3P25940 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL5A3P25940 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
COL5A3P25940 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL5A3P25940 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
COL5A3P25940 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL5A3P25940 KRT18P67-201ENST00000432816 1264 ntBASIC23.65■■□□□ 1.38
COL5A3P25940 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC23.65■■□□□ 1.38
COL5A3P25940 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC23.65■■□□□ 1.38
COL5A3P25940 TPM1-218ENST00000559281 851 ntTSL 5 BASIC23.65■■□□□ 1.38
COL5A3P25940 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC23.65■■□□□ 1.38
COL5A3P25940 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC23.65■■□□□ 1.38
COL5A3P25940 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC23.65■■□□□ 1.38
COL5A3P25940 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL5A3P25940 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL5A3P25940 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC23.65■■□□□ 1.38
COL5A3P25940 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC23.65■■□□□ 1.38
COL5A3P25940 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL5A3P25940 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC23.65■■□□□ 1.38
COL5A3P25940 AL353692.3-201ENST00000407031 1396 ntBASIC23.65■■□□□ 1.38
COL5A3P25940 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
COL5A3P25940 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
COL5A3P25940 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC23.64■■□□□ 1.38
COL5A3P25940 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
COL5A3P25940 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC23.64■■□□□ 1.38
COL5A3P25940 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC23.64■■□□□ 1.38
COL5A3P25940 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC23.64■■□□□ 1.38
COL5A3P25940 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
COL5A3P25940 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.38
COL5A3P25940 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.38
COL5A3P25940 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
COL5A3P25940 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
COL5A3P25940 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
COL5A3P25940 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
COL5A3P25940 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
COL5A3P25940 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
COL5A3P25940 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
COL5A3P25940 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC23.64■■□□□ 1.37
COL5A3P25940 KRT18P41-201ENST00000518924 1277 ntBASIC23.64■■□□□ 1.37
COL5A3P25940 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC23.64■■□□□ 1.37
COL5A3P25940 AC148477.8-201ENST00000624298 468 ntBASIC23.64■■□□□ 1.37
COL5A3P25940 AL137060.1-201ENST00000618151 2648 ntBASIC23.64■■□□□ 1.37
COL5A3P25940 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
COL5A3P25940 AC112907.3-201ENST00000577781 2400 ntBASIC23.64■■□□□ 1.37
COL5A3P25940 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC23.63■■□□□ 1.37
COL5A3P25940 IRX1P1-201ENST00000438849 1838 ntBASIC23.63■■□□□ 1.37
COL5A3P25940 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
COL5A3P25940 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC23.63■■□□□ 1.37
COL5A3P25940 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
COL5A3P25940 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
COL5A3P25940 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC23.63■■□□□ 1.37
COL5A3P25940 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC23.63■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms