Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1BO60663 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1BO60663 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC16.53■□□□□ 0.24
LMX1BO60663 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1BO60663 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
LMX1BO60663 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
LMX1BO60663 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1BO60663 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1BO60663 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1BO60663 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1BO60663 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1BO60663 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1BO60663 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1BO60663 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1BO60663 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1BO60663 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.53■□□□□ 0.24
LMX1BO60663 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
LMX1BO60663 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
LMX1BO60663 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC16.53■□□□□ 0.24
LMX1BO60663 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC16.53■□□□□ 0.24
LMX1BO60663 KRT18P35-201ENST00000510488 1269 ntBASIC16.53■□□□□ 0.24
LMX1BO60663 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC16.53■□□□□ 0.24
LMX1BO60663 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC16.53■□□□□ 0.24
LMX1BO60663 AL049597.2-201ENST00000565575 961 ntBASIC16.53■□□□□ 0.24
LMX1BO60663 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.53■□□□□ 0.24
LMX1BO60663 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC16.53■□□□□ 0.24
LMX1BO60663 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1BO60663 AC073195.1-201ENST00000607241 877 ntBASIC16.53■□□□□ 0.24
LMX1BO60663 AL590326.2-201ENST00000625139 305 ntBASIC16.53■□□□□ 0.24
LMX1BO60663 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC16.53■□□□□ 0.24
LMX1BO60663 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC16.53■□□□□ 0.24
LMX1BO60663 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1BO60663 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC16.53■□□□□ 0.24
LMX1BO60663 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC16.53■□□□□ 0.24
LMX1BO60663 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1BO60663 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1BO60663 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1BO60663 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1BO60663 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1BO60663 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1BO60663 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC16.53■□□□□ 0.24
LMX1BO60663 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1BO60663 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LMX1BO60663 GOLGA6L5P-202ENST00000515341 1828 ntBASIC16.52■□□□□ 0.24
LMX1BO60663 SRI-203ENST00000419179 1307 ntTSL 2 BASIC16.52■□□□□ 0.24
LMX1BO60663 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
LMX1BO60663 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1BO60663 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC16.52■□□□□ 0.24
LMX1BO60663 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1BO60663 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1BO60663 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1BO60663 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC16.52■□□□□ 0.24
LMX1BO60663 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1BO60663 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
LMX1BO60663 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1BO60663 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LMX1BO60663 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC16.52■□□□□ 0.24
LMX1BO60663 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC16.52■□□□□ 0.24
LMX1BO60663 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC16.52■□□□□ 0.24
LMX1BO60663 AC005363.2-201ENST00000618631 242 ntBASIC16.52■□□□□ 0.24
LMX1BO60663 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.52■□□□□ 0.24
LMX1BO60663 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LMX1BO60663 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LMX1BO60663 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LMX1BO60663 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LMX1BO60663 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LMX1BO60663 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LMX1BO60663 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
LMX1BO60663 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
LMX1BO60663 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LMX1BO60663 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1BO60663 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC16.51■□□□□ 0.23
LMX1BO60663 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC16.51■□□□□ 0.23
LMX1BO60663 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1BO60663 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1BO60663 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
LMX1BO60663 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1BO60663 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1BO60663 ANO7L1-203ENST00000602586 1720 ntBASIC16.51■□□□□ 0.23
LMX1BO60663 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
LMX1BO60663 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC16.51■□□□□ 0.23
LMX1BO60663 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1BO60663 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1BO60663 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1BO60663 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1BO60663 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC16.51■□□□□ 0.23
LMX1BO60663 AC004264.1-201ENST00000608354 794 ntBASIC16.51■□□□□ 0.23
LMX1BO60663 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC16.51■□□□□ 0.23
LMX1BO60663 HLA-A-209ENST00000638375 975 ntBASIC16.51■□□□□ 0.23
LMX1BO60663 AC092865.7-201ENST00000641832 219 ntBASIC16.51■□□□□ 0.23
LMX1BO60663 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1BO60663 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.51■□□□□ 0.23
LMX1BO60663 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1BO60663 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC16.51■□□□□ 0.23
LMX1BO60663 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC16.51■□□□□ 0.23
LMX1BO60663 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1BO60663 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1BO60663 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1BO60663 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LMX1BO60663 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms