Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 RCC2P3-201ENST00000418112 1537 ntBASIC20.13■□□□□ 0.81
FOXN3O00409 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
FOXN3O00409 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.13■□□□□ 0.81
FOXN3O00409 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
FOXN3O00409 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
FOXN3O00409 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
FOXN3O00409 MFAP1P1-201ENST00000442257 1255 ntBASIC20.13■□□□□ 0.81
FOXN3O00409 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.13■□□□□ 0.81
FOXN3O00409 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.13■□□□□ 0.81
FOXN3O00409 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.13■□□□□ 0.81
FOXN3O00409 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.13■□□□□ 0.81
FOXN3O00409 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
FOXN3O00409 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20.13■□□□□ 0.81
FOXN3O00409 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
FOXN3O00409 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
FOXN3O00409 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.13■□□□□ 0.81
FOXN3O00409 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
FOXN3O00409 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.13■□□□□ 0.81
FOXN3O00409 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC20.13■□□□□ 0.81
FOXN3O00409 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
FOXN3O00409 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
FOXN3O00409 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
FOXN3O00409 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
FOXN3O00409 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC20.13■□□□□ 0.81
FOXN3O00409 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
FOXN3O00409 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
FOXN3O00409 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
FOXN3O00409 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
FOXN3O00409 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
FOXN3O00409 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
FOXN3O00409 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.12■□□□□ 0.81
FOXN3O00409 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC20.12■□□□□ 0.81
FOXN3O00409 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
FOXN3O00409 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
FOXN3O00409 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.12■□□□□ 0.81
FOXN3O00409 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
FOXN3O00409 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.12■□□□□ 0.81
FOXN3O00409 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC20.12■□□□□ 0.81
FOXN3O00409 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC20.12■□□□□ 0.81
FOXN3O00409 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC20.12■□□□□ 0.81
FOXN3O00409 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
FOXN3O00409 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
FOXN3O00409 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
FOXN3O00409 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC20.12■□□□□ 0.81
FOXN3O00409 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC20.12■□□□□ 0.81
FOXN3O00409 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.12■□□□□ 0.81
FOXN3O00409 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
FOXN3O00409 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
FOXN3O00409 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
FOXN3O00409 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
FOXN3O00409 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
FOXN3O00409 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
FOXN3O00409 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
FOXN3O00409 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
FOXN3O00409 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
FOXN3O00409 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
FOXN3O00409 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
FOXN3O00409 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
FOXN3O00409 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
FOXN3O00409 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.11■□□□□ 0.81
FOXN3O00409 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.11■□□□□ 0.81
FOXN3O00409 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.11■□□□□ 0.81
FOXN3O00409 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.11■□□□□ 0.81
FOXN3O00409 AP003071.4-201ENST00000562276 1284 ntBASIC20.11■□□□□ 0.81
FOXN3O00409 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
FOXN3O00409 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
FOXN3O00409 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
FOXN3O00409 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
FOXN3O00409 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
FOXN3O00409 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
FOXN3O00409 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
FOXN3O00409 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
FOXN3O00409 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
FOXN3O00409 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
FOXN3O00409 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
FOXN3O00409 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.11■□□□□ 0.81
FOXN3O00409 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.11■□□□□ 0.81
FOXN3O00409 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.11■□□□□ 0.81
FOXN3O00409 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
FOXN3O00409 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.1■□□□□ 0.81
FOXN3O00409 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC20.1■□□□□ 0.81
FOXN3O00409 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
FOXN3O00409 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
FOXN3O00409 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
FOXN3O00409 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
FOXN3O00409 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.1■□□□□ 0.81
FOXN3O00409 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
FOXN3O00409 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC20.1■□□□□ 0.81
FOXN3O00409 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
FOXN3O00409 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.1■□□□□ 0.81
FOXN3O00409 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
FOXN3O00409 TSPY7P-201ENST00000431358 1114 ntBASIC20.1■□□□□ 0.81
FOXN3O00409 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.1■□□□□ 0.81
FOXN3O00409 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
FOXN3O00409 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.1■□□□□ 0.81
FOXN3O00409 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.1■□□□□ 0.81
FOXN3O00409 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.1■□□□□ 0.81
FOXN3O00409 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.1■□□□□ 0.81
FOXN3O00409 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.1■□□□□ 0.81
FOXN3O00409 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms