Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 USP36-216ENST00000589424 970 ntTSL 5 BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 AP001412.1-201ENST00000608405 714 ntBASIC15.24■□□□□ 0.03
FOXA2Q9Y261 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 BICD1-207ENST00000551848 1962 ntBASIC15.24■□□□□ 0.03
FOXA2Q9Y261 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 TSPY23P-201ENST00000440136 739 ntBASIC15.23■□□□□ 0.03
FOXA2Q9Y261 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 AL353708.3-201ENST00000610272 989 ntBASIC15.23■□□□□ 0.03
FOXA2Q9Y261 HLA-A-209ENST00000638375 975 ntBASIC15.23■□□□□ 0.03
FOXA2Q9Y261 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 COBL-210ENST00000632460 1941 ntTSL 5 BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
FOXA2Q9Y261 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 NIFKP9-201ENST00000419265 221 ntBASIC15.22■□□□□ 0.03
FOXA2Q9Y261 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 AC012618.2-201ENST00000428058 849 ntBASIC15.22■□□□□ 0.03
FOXA2Q9Y261 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 AC008550.1-201ENST00000511500 884 ntBASIC15.22■□□□□ 0.03
FOXA2Q9Y261 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 AF186192.3-201ENST00000583427 947 ntBASIC15.22■□□□□ 0.03
FOXA2Q9Y261 RPS15-203ENST00000586096 570 ntTSL 2 BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
FOXA2Q9Y261 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms