Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CDT1Q9H211 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CDT1Q9H211 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CDT1Q9H211 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CDT1Q9H211 ARMC10P1-201ENST00000313754 855 ntBASIC20.38■□□□□ 0.85
CDT1Q9H211 ELP6-205ENST00000439305 880 ntTSL 2 BASIC20.38■□□□□ 0.85
CDT1Q9H211 HOMER2P1-201ENST00000455653 964 ntBASIC20.38■□□□□ 0.85
CDT1Q9H211 AL359075.1-203ENST00000462729 1002 ntBASIC20.38■□□□□ 0.85
CDT1Q9H211 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC20.38■□□□□ 0.85
CDT1Q9H211 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CDT1Q9H211 CD81-212ENST00000526072 1172 ntTSL 5 BASIC20.38■□□□□ 0.85
CDT1Q9H211 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CDT1Q9H211 LINC01238-205ENST00000567549 1107 ntBASIC20.38■□□□□ 0.85
CDT1Q9H211 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC20.38■□□□□ 0.85
CDT1Q9H211 AC024243.1-201ENST00000609234 778 ntBASIC20.38■□□□□ 0.85
CDT1Q9H211 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.38■□□□□ 0.85
CDT1Q9H211 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC20.38■□□□□ 0.85
CDT1Q9H211 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CDT1Q9H211 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.38■□□□□ 0.85
CDT1Q9H211 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CDT1Q9H211 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CDT1Q9H211 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
CDT1Q9H211 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC20.37■□□□□ 0.85
CDT1Q9H211 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.37■□□□□ 0.85
CDT1Q9H211 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC20.37■□□□□ 0.85
CDT1Q9H211 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CDT1Q9H211 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDT1Q9H211 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDT1Q9H211 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
CDT1Q9H211 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDT1Q9H211 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDT1Q9H211 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
CDT1Q9H211 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.37■□□□□ 0.85
CDT1Q9H211 SAPCD2P2-201ENST00000431719 1174 ntBASIC20.37■□□□□ 0.85
CDT1Q9H211 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC20.37■□□□□ 0.85
CDT1Q9H211 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC20.37■□□□□ 0.85
CDT1Q9H211 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC20.37■□□□□ 0.85
CDT1Q9H211 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC20.37■□□□□ 0.85
CDT1Q9H211 AC083906.6-201ENST00000641366 219 ntBASIC20.37■□□□□ 0.85
CDT1Q9H211 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC20.37■□□□□ 0.85
CDT1Q9H211 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDT1Q9H211 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDT1Q9H211 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC20.37■□□□□ 0.85
CDT1Q9H211 USP39-202ENST00000409025 1946 ntTSL 5 BASIC20.37■□□□□ 0.85
CDT1Q9H211 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
CDT1Q9H211 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDT1Q9H211 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDT1Q9H211 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDT1Q9H211 MTMR9LP-203ENST00000426597 1545 ntBASIC20.37■□□□□ 0.85
CDT1Q9H211 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CDT1Q9H211 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CDT1Q9H211 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDT1Q9H211 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CDT1Q9H211 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.36■□□□□ 0.85
CDT1Q9H211 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDT1Q9H211 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC20.36■□□□□ 0.85
CDT1Q9H211 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC20.36■□□□□ 0.85
CDT1Q9H211 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDT1Q9H211 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDT1Q9H211 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDT1Q9H211 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDT1Q9H211 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
CDT1Q9H211 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC20.36■□□□□ 0.85
CDT1Q9H211 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC20.36■□□□□ 0.85
CDT1Q9H211 SEC1P-202ENST00000473944 940 ntBASIC20.36■□□□□ 0.85
CDT1Q9H211 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.36■□□□□ 0.85
CDT1Q9H211 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
CDT1Q9H211 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.36■□□□□ 0.85
CDT1Q9H211 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CDT1Q9H211 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.36■□□□□ 0.85
CDT1Q9H211 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDT1Q9H211 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CDT1Q9H211 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDT1Q9H211 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDT1Q9H211 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CDT1Q9H211 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDT1Q9H211 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CDT1Q9H211 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC20.36■□□□□ 0.85
CDT1Q9H211 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC20.35■□□□□ 0.85
CDT1Q9H211 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDT1Q9H211 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.35■□□□□ 0.85
CDT1Q9H211 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDT1Q9H211 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.35■□□□□ 0.85
CDT1Q9H211 SPDYE15P-201ENST00000424157 909 ntBASIC20.35■□□□□ 0.85
CDT1Q9H211 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDT1Q9H211 RMI2-205ENST00000576027 818 ntTSL 2 BASIC20.35■□□□□ 0.85
CDT1Q9H211 NT5C-211ENST00000582170 653 ntTSL 3 BASIC20.35■□□□□ 0.85
CDT1Q9H211 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.35■□□□□ 0.85
CDT1Q9H211 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.35■□□□□ 0.85
CDT1Q9H211 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.35■□□□□ 0.85
CDT1Q9H211 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CDT1Q9H211 AC112497.1-201ENST00000624824 639 ntBASIC20.35■□□□□ 0.85
CDT1Q9H211 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CDT1Q9H211 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.35■□□□□ 0.85
CDT1Q9H211 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC20.35■□□□□ 0.85
CDT1Q9H211 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.35■□□□□ 0.85
CDT1Q9H211 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDT1Q9H211 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CDT1Q9H211 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.35■□□□□ 0.85
CDT1Q9H211 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms