Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 HEIH-201ENST00000623091 1652 ntBASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.31■□□□□ 0.52
CCDC28BQ9BUN5 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 AL050303.2-201ENST00000619798 666 ntBASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
CCDC28BQ9BUN5 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28BQ9BUN5 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28BQ9BUN5 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28BQ9BUN5 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28BQ9BUN5 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28BQ9BUN5 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28BQ9BUN5 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CCDC28BQ9BUN5 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC28BQ9BUN5 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.29■□□□□ 0.52
CCDC28BQ9BUN5 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC28BQ9BUN5 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC18.29■□□□□ 0.52
CCDC28BQ9BUN5 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28BQ9BUN5 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
CCDC28BQ9BUN5 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28BQ9BUN5 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
CCDC28BQ9BUN5 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28BQ9BUN5 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28BQ9BUN5 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC28BQ9BUN5 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28BQ9BUN5 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28BQ9BUN5 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28BQ9BUN5 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28BQ9BUN5 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.29■□□□□ 0.52
CCDC28BQ9BUN5 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28BQ9BUN5 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CCDC28BQ9BUN5 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 TNRC18P3-201ENST00000441896 2691 ntBASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 MIPEPP3-201ENST00000412105 444 ntBASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 AC091874.3-201ENST00000512672 1195 ntBASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CCDC28BQ9BUN5 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms