Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
LIMD2Q9BT23 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
LIMD2Q9BT23 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC11.21□□□□□ -0.61
LIMD2Q9BT23 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.61
LIMD2Q9BT23 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
LIMD2Q9BT23 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
LIMD2Q9BT23 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC11.21□□□□□ -0.61
LIMD2Q9BT23 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC11.21□□□□□ -0.61
LIMD2Q9BT23 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
LIMD2Q9BT23 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
LIMD2Q9BT23 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
LIMD2Q9BT23 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
LIMD2Q9BT23 POM121L13P-201ENST00000422362 380 ntBASIC11.21□□□□□ -0.61
LIMD2Q9BT23 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC11.21□□□□□ -0.61
LIMD2Q9BT23 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC11.21□□□□□ -0.61
LIMD2Q9BT23 UNC93B4-201ENST00000505679 747 ntBASIC11.21□□□□□ -0.61
LIMD2Q9BT23 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC11.21□□□□□ -0.61
LIMD2Q9BT23 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC11.21□□□□□ -0.61
LIMD2Q9BT23 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.61
LIMD2Q9BT23 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
LIMD2Q9BT23 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.61
LIMD2Q9BT23 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
LIMD2Q9BT23 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC11.21□□□□□ -0.61
LIMD2Q9BT23 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
LIMD2Q9BT23 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
LIMD2Q9BT23 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
LIMD2Q9BT23 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC11.21□□□□□ -0.62
LIMD2Q9BT23 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC11.21□□□□□ -0.62
LIMD2Q9BT23 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC11.21□□□□□ -0.62
LIMD2Q9BT23 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
LIMD2Q9BT23 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
LIMD2Q9BT23 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
LIMD2Q9BT23 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.62
LIMD2Q9BT23 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
LIMD2Q9BT23 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
LIMD2Q9BT23 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
LIMD2Q9BT23 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC11.21□□□□□ -0.62
LIMD2Q9BT23 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC11.21□□□□□ -0.62
LIMD2Q9BT23 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
LIMD2Q9BT23 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
LIMD2Q9BT23 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC11.21□□□□□ -0.62
LIMD2Q9BT23 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC11.21□□□□□ -0.62
LIMD2Q9BT23 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.62
LIMD2Q9BT23 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 PWWP2AP1-201ENST00000429776 2273 ntBASIC11.2□□□□□ -0.62
LIMD2Q9BT23 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 AC125437.2-201ENST00000625180 2167 ntBASIC11.2□□□□□ -0.62
LIMD2Q9BT23 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 ID1-201ENST00000376105 1233 ntBASIC11.2□□□□□ -0.62
LIMD2Q9BT23 HLA-L-209ENST00000420110 1011 ntBASIC11.2□□□□□ -0.62
LIMD2Q9BT23 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 SLC29A4P2-201ENST00000504749 1089 ntBASIC11.2□□□□□ -0.62
LIMD2Q9BT23 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
LIMD2Q9BT23 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC11.19□□□□□ -0.62
LIMD2Q9BT23 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
LIMD2Q9BT23 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC11.19□□□□□ -0.62
LIMD2Q9BT23 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC11.19□□□□□ -0.62
LIMD2Q9BT23 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC11.19□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms