Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 AC239809.2-201ENST00000415381 517 ntBASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 LETM1P2-201ENST00000597330 2178 ntBASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRIM56Q9BRZ2 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 Z98044.1-201ENST00000632503 1764 ntBASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 AC018470.1-201ENST00000624790 3129 ntBASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 AC004264.1-201ENST00000608354 794 ntBASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 AC124016.1-201ENST00000609552 612 ntBASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 ITM2C-210ENST00000620962 501 ntBASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 AC073648.6-201ENST00000641589 218 ntBASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRIM56Q9BRZ2 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM56Q9BRZ2 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM56Q9BRZ2 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM56Q9BRZ2 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM56Q9BRZ2 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM56Q9BRZ2 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM56Q9BRZ2 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM56Q9BRZ2 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM56Q9BRZ2 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM56Q9BRZ2 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM56Q9BRZ2 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM56Q9BRZ2 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
TRIM56Q9BRZ2 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM56Q9BRZ2 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC19.18■□□□□ 0.66
TRIM56Q9BRZ2 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM56Q9BRZ2 Z85996.1-201ENST00000494644 937 ntBASIC19.18■□□□□ 0.66
TRIM56Q9BRZ2 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM56Q9BRZ2 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
TRIM56Q9BRZ2 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.18■□□□□ 0.66
TRIM56Q9BRZ2 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
TRIM56Q9BRZ2 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
TRIM56Q9BRZ2 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM56Q9BRZ2 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM56Q9BRZ2 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
TRIM56Q9BRZ2 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRIM56Q9BRZ2 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms