Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 AC079776.4-201ENST00000511039 504 ntBASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 AC006538.3-201ENST00000612495 578 ntBASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 AC004263.2-201ENST00000617183 678 ntBASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 UBC-206ENST00000538617 1303 ntTSL 5 BASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SNRNP40Q96DI7 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 AP002469.2-201ENST00000531724 424 ntBASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 AC090616.6-201ENST00000582640 721 ntBASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 AC099778.1-201ENST00000568593 1911 ntBASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SNRNP40Q96DI7 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
SNRNP40Q96DI7 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
SNRNP40Q96DI7 AC092667.1-201ENST00000434301 2586 ntBASIC16.89■□□□□ 0.3
SNRNP40Q96DI7 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
SNRNP40Q96DI7 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 KRT18P23-201ENST00000435622 1283 ntBASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 AC106795.1-205ENST00000512851 1056 ntBASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 SLC25A6P4-201ENST00000586535 553 ntBASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 AC005332.3-201ENST00000589904 676 ntBASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 AC138894.3-201ENST00000603787 634 ntBASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 IGHV3-41-201ENST00000613121 348 ntBASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SNRNP40Q96DI7 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SNRNP40Q96DI7 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SNRNP40Q96DI7 GABARAPL3-202ENST00000624044 1851 ntBASIC16.88■□□□□ 0.29
SNRNP40Q96DI7 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.88■□□□□ 0.29
SNRNP40Q96DI7 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
SNRNP40Q96DI7 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms