Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SHROOM3Q8TF72 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHROOM3Q8TF72 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SHROOM3Q8TF72 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.18■□□□□ 0.66
SHROOM3Q8TF72 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SHROOM3Q8TF72 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.18■□□□□ 0.66
SHROOM3Q8TF72 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.18■□□□□ 0.66
SHROOM3Q8TF72 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.18■□□□□ 0.66
SHROOM3Q8TF72 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SHROOM3Q8TF72 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC19.18■□□□□ 0.66
SHROOM3Q8TF72 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHROOM3Q8TF72 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.18■□□□□ 0.66
SHROOM3Q8TF72 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHROOM3Q8TF72 AC113347.1-201ENST00000413321 391 ntBASIC19.18■□□□□ 0.66
SHROOM3Q8TF72 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.18■□□□□ 0.66
SHROOM3Q8TF72 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SHROOM3Q8TF72 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHROOM3Q8TF72 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
SHROOM3Q8TF72 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHROOM3Q8TF72 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.18■□□□□ 0.66
SHROOM3Q8TF72 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
SHROOM3Q8TF72 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.18■□□□□ 0.66
SHROOM3Q8TF72 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHROOM3Q8TF72 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 ILF2-202ENST00000368681 726 ntTSL 2 BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 AL590326.2-201ENST00000625139 305 ntBASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC19.17■□□□□ 0.66
SHROOM3Q8TF72 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 METTL23-204ENST00000586752 904 ntTSL 2 BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHROOM3Q8TF72 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.15■□□□□ 0.66
SHROOM3Q8TF72 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.15■□□□□ 0.66
SHROOM3Q8TF72 KRT18P41-201ENST00000518924 1277 ntBASIC19.15■□□□□ 0.66
SHROOM3Q8TF72 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
SHROOM3Q8TF72 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.15■□□□□ 0.66
SHROOM3Q8TF72 AC068587.9-201ENST00000641814 219 ntBASIC19.15■□□□□ 0.66
SHROOM3Q8TF72 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
SHROOM3Q8TF72 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SHROOM3Q8TF72 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHROOM3Q8TF72 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.15■□□□□ 0.66
SHROOM3Q8TF72 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC19.15■□□□□ 0.66
SHROOM3Q8TF72 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SHROOM3Q8TF72 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.15■□□□□ 0.66
SHROOM3Q8TF72 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC19.15■□□□□ 0.66
SHROOM3Q8TF72 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC19.15■□□□□ 0.66
SHROOM3Q8TF72 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.15■□□□□ 0.66
SHROOM3Q8TF72 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHROOM3Q8TF72 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.14■□□□□ 0.66
SHROOM3Q8TF72 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms