Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SRP54P61011 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SRP54P61011 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SRP54P61011 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SRP54P61011 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SRP54P61011 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SRP54P61011 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SRP54P61011 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SRP54P61011 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SRP54P61011 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SRP54P61011 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
SRP54P61011 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SRP54P61011 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.55■□□□□ 0.56
SRP54P61011 KRT18P38-201ENST00000449496 1282 ntBASIC18.55■□□□□ 0.56
SRP54P61011 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.55■□□□□ 0.56
SRP54P61011 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.55■□□□□ 0.56
SRP54P61011 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.55■□□□□ 0.56
SRP54P61011 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.55■□□□□ 0.56
SRP54P61011 AC091076.1-201ENST00000610741 619 ntBASIC18.55■□□□□ 0.56
SRP54P61011 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
SRP54P61011 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SRP54P61011 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SRP54P61011 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SRP54P61011 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.55■□□□□ 0.56
SRP54P61011 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SRP54P61011 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.55■□□□□ 0.56
SRP54P61011 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SRP54P61011 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
SRP54P61011 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SRP54P61011 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SRP54P61011 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SRP54P61011 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
SRP54P61011 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SRP54P61011 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
SRP54P61011 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SRP54P61011 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
SRP54P61011 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.54■□□□□ 0.56
SRP54P61011 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SRP54P61011 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SRP54P61011 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SRP54P61011 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC18.54■□□□□ 0.56
SRP54P61011 AL671277.2-201ENST00000458060 996 ntBASIC18.54■□□□□ 0.56
SRP54P61011 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC18.54■□□□□ 0.56
SRP54P61011 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SRP54P61011 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SRP54P61011 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SRP54P61011 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SRP54P61011 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SRP54P61011 AC036111.1-201ENST00000533973 1582 ntBASIC18.54■□□□□ 0.56
SRP54P61011 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SRP54P61011 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
SRP54P61011 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SRP54P61011 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SRP54P61011 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SRP54P61011 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.54■□□□□ 0.56
SRP54P61011 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
SRP54P61011 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.54■□□□□ 0.56
SRP54P61011 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SRP54P61011 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.53■□□□□ 0.56
SRP54P61011 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.53■□□□□ 0.56
SRP54P61011 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SRP54P61011 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.53■□□□□ 0.56
SRP54P61011 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.53■□□□□ 0.56
SRP54P61011 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.53■□□□□ 0.56
SRP54P61011 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SRP54P61011 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
SRP54P61011 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SRP54P61011 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.53■□□□□ 0.56
SRP54P61011 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SRP54P61011 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.53■□□□□ 0.56
SRP54P61011 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.53■□□□□ 0.56
SRP54P61011 MIR3180-5-201ENST00000583743 153 ntBASIC18.53■□□□□ 0.56
SRP54P61011 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SRP54P61011 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.53■□□□□ 0.56
SRP54P61011 AL121956.5-201ENST00000625261 221 ntBASIC18.53■□□□□ 0.56
SRP54P61011 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
SRP54P61011 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.53■□□□□ 0.56
SRP54P61011 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.53■□□□□ 0.56
SRP54P61011 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
SRP54P61011 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.53■□□□□ 0.56
SRP54P61011 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SRP54P61011 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SRP54P61011 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SRP54P61011 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SRP54P61011 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.53■□□□□ 0.56
SRP54P61011 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.53■□□□□ 0.56
SRP54P61011 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
SRP54P61011 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.53■□□□□ 0.56
SRP54P61011 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SRP54P61011 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SRP54P61011 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SRP54P61011 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SRP54P61011 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SRP54P61011 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
SRP54P61011 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SRP54P61011 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SRP54P61011 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SRP54P61011 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
SRP54P61011 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
SRP54P61011 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms