Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLDN3O15551 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLDN3O15551 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLDN3O15551 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CLDN3O15551 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.56■□□□□ 0.88
CLDN3O15551 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CLDN3O15551 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CLDN3O15551 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CLDN3O15551 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC20.55■□□□□ 0.88
CLDN3O15551 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN3O15551 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN3O15551 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN3O15551 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN3O15551 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
CLDN3O15551 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN3O15551 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
CLDN3O15551 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
CLDN3O15551 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN3O15551 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN3O15551 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN3O15551 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN3O15551 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN3O15551 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN3O15551 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.55■□□□□ 0.88
CLDN3O15551 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.55■□□□□ 0.88
CLDN3O15551 TMPOP1-202ENST00000424642 1267 ntBASIC20.55■□□□□ 0.88
CLDN3O15551 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.55■□□□□ 0.88
CLDN3O15551 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CLDN3O15551 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN3O15551 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC20.55■□□□□ 0.88
CLDN3O15551 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC20.55■□□□□ 0.88
CLDN3O15551 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC20.55■□□□□ 0.88
CLDN3O15551 AL138966.2-201ENST00000621997 464 ntBASIC20.55■□□□□ 0.88
CLDN3O15551 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN3O15551 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN3O15551 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN3O15551 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN3O15551 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN3O15551 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC20.55■□□□□ 0.88
CLDN3O15551 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC20.55■□□□□ 0.88
CLDN3O15551 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN3O15551 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLDN3O15551 TNXA-203ENST00000507684 2038 ntBASIC20.54■□□□□ 0.88
CLDN3O15551 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN3O15551 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN3O15551 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN3O15551 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC20.54■□□□□ 0.88
CLDN3O15551 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CLDN3O15551 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN3O15551 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN3O15551 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN3O15551 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC20.54■□□□□ 0.88
CLDN3O15551 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN3O15551 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN3O15551 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN3O15551 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.54■□□□□ 0.88
CLDN3O15551 MCCD1P1-208ENST00000445732 328 ntBASIC20.54■□□□□ 0.88
CLDN3O15551 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC20.54■□□□□ 0.88
CLDN3O15551 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.54■□□□□ 0.88
CLDN3O15551 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
CLDN3O15551 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN3O15551 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC20.54■□□□□ 0.88
CLDN3O15551 KRT8P32-201ENST00000512863 1461 ntBASIC20.54■□□□□ 0.88
CLDN3O15551 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN3O15551 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC20.54■□□□□ 0.88
CLDN3O15551 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN3O15551 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CLDN3O15551 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC20.54■□□□□ 0.88
CLDN3O15551 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN3O15551 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN3O15551 RCC2P3-201ENST00000418112 1537 ntBASIC20.53■□□□□ 0.88
CLDN3O15551 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN3O15551 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN3O15551 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN3O15551 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN3O15551 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN3O15551 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN3O15551 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN3O15551 BX664615.1-201ENST00000443558 458 ntBASIC20.53■□□□□ 0.88
CLDN3O15551 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN3O15551 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC20.53■□□□□ 0.88
CLDN3O15551 AC141257.4-201ENST00000634557 245 ntBASIC20.53■□□□□ 0.88
CLDN3O15551 AC136944.6-201ENST00000634818 245 ntBASIC20.53■□□□□ 0.88
CLDN3O15551 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN3O15551 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN3O15551 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC20.53■□□□□ 0.88
CLDN3O15551 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN3O15551 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
CLDN3O15551 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
CLDN3O15551 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.53■□□□□ 0.88
CLDN3O15551 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN3O15551 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN3O15551 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
CLDN3O15551 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLDN3O15551 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
CLDN3O15551 AC120498.9-201ENST00000339021 3867 ntBASIC20.53■□□□□ 0.88
CLDN3O15551 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.88
CLDN3O15551 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLDN3O15551 AL109659.2-201ENST00000606809 1674 ntBASIC20.52■□□□□ 0.88
CLDN3O15551 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms