Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
SLC28A1O00337 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
SLC28A1O00337 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.14■□□□□ 0.49
SLC28A1O00337 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SLC28A1O00337 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.14■□□□□ 0.49
SLC28A1O00337 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SLC28A1O00337 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SLC28A1O00337 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
SLC28A1O00337 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.14■□□□□ 0.49
SLC28A1O00337 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.14■□□□□ 0.49
SLC28A1O00337 NIFKP9-201ENST00000419265 221 ntBASIC18.14■□□□□ 0.49
SLC28A1O00337 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.14■□□□□ 0.49
SLC28A1O00337 AC004980.1-204ENST00000429707 299 ntBASIC18.14■□□□□ 0.49
SLC28A1O00337 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.14■□□□□ 0.49
SLC28A1O00337 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SLC28A1O00337 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.14■□□□□ 0.49
SLC28A1O00337 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.14■□□□□ 0.49
SLC28A1O00337 AC068587.9-201ENST00000641814 219 ntBASIC18.14■□□□□ 0.49
SLC28A1O00337 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SLC28A1O00337 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SLC28A1O00337 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SLC28A1O00337 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
SLC28A1O00337 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SLC28A1O00337 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.13■□□□□ 0.49
SLC28A1O00337 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.13■□□□□ 0.49
SLC28A1O00337 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.13■□□□□ 0.49
SLC28A1O00337 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
SLC28A1O00337 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SLC28A1O00337 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SLC28A1O00337 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
SLC28A1O00337 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SLC28A1O00337 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SLC28A1O00337 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SLC28A1O00337 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.13■□□□□ 0.49
SLC28A1O00337 AP002982.1-201ENST00000492365 877 ntBASIC18.13■□□□□ 0.49
SLC28A1O00337 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
SLC28A1O00337 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
SLC28A1O00337 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.13■□□□□ 0.49
SLC28A1O00337 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.13■□□□□ 0.49
SLC28A1O00337 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SLC28A1O00337 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SLC28A1O00337 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SLC28A1O00337 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
SLC28A1O00337 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.13■□□□□ 0.49
SLC28A1O00337 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SLC28A1O00337 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SLC28A1O00337 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SLC28A1O00337 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SLC28A1O00337 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
SLC28A1O00337 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
SLC28A1O00337 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.13■□□□□ 0.49
SLC28A1O00337 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
SLC28A1O00337 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.12■□□□□ 0.49
SLC28A1O00337 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SLC28A1O00337 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.12■□□□□ 0.49
SLC28A1O00337 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SLC28A1O00337 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SLC28A1O00337 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SLC28A1O00337 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SLC28A1O00337 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.12■□□□□ 0.49
SLC28A1O00337 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SLC28A1O00337 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SLC28A1O00337 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SLC28A1O00337 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SLC28A1O00337 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.12■□□□□ 0.49
SLC28A1O00337 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SLC28A1O00337 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.12■□□□□ 0.49
SLC28A1O00337 AL353708.3-201ENST00000610272 989 ntBASIC18.12■□□□□ 0.49
SLC28A1O00337 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
SLC28A1O00337 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.12■□□□□ 0.49
SLC28A1O00337 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.12■□□□□ 0.49
SLC28A1O00337 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
SLC28A1O00337 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.12■□□□□ 0.49
SLC28A1O00337 KRT8P3-201ENST00000519669 1449 ntBASIC18.12■□□□□ 0.49
SLC28A1O00337 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SLC28A1O00337 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.12■□□□□ 0.49
SLC28A1O00337 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SLC28A1O00337 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SLC28A1O00337 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SLC28A1O00337 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.12■□□□□ 0.49
SLC28A1O00337 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SLC28A1O00337 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.12■□□□□ 0.49
SLC28A1O00337 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
SLC28A1O00337 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SLC28A1O00337 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SLC28A1O00337 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
SLC28A1O00337 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SLC28A1O00337 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SLC28A1O00337 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
SLC28A1O00337 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SLC28A1O00337 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SLC28A1O00337 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SLC28A1O00337 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SLC28A1O00337 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.11■□□□□ 0.49
SLC28A1O00337 KSR1P1-201ENST00000446298 240 ntBASIC18.11■□□□□ 0.49
SLC28A1O00337 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.11■□□□□ 0.49
SLC28A1O00337 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.11■□□□□ 0.49
SLC28A1O00337 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SLC28A1O00337 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SLC28A1O00337 KRT8P32-201ENST00000512863 1461 ntBASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms