Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
LRRC53A6NM62 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC53A6NM62 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC53A6NM62 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC53A6NM62 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC53A6NM62 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC53A6NM62 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
LRRC53A6NM62 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.31■□□□□ 0.84
LRRC53A6NM62 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC20.31■□□□□ 0.84
LRRC53A6NM62 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LRRC53A6NM62 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LRRC53A6NM62 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LRRC53A6NM62 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LRRC53A6NM62 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LRRC53A6NM62 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
LRRC53A6NM62 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC20.31■□□□□ 0.84
LRRC53A6NM62 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LRRC53A6NM62 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LRRC53A6NM62 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
LRRC53A6NM62 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.31■□□□□ 0.84
LRRC53A6NM62 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.31■□□□□ 0.84
LRRC53A6NM62 AC110285.5-201ENST00000611501 352 ntBASIC20.31■□□□□ 0.84
LRRC53A6NM62 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC20.31■□□□□ 0.84
LRRC53A6NM62 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LRRC53A6NM62 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.31■□□□□ 0.84
LRRC53A6NM62 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LRRC53A6NM62 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LRRC53A6NM62 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
LRRC53A6NM62 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC20.31■□□□□ 0.84
LRRC53A6NM62 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC20.31■□□□□ 0.84
LRRC53A6NM62 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC53A6NM62 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC20.3■□□□□ 0.84
LRRC53A6NM62 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
LRRC53A6NM62 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC53A6NM62 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
LRRC53A6NM62 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
LRRC53A6NM62 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC53A6NM62 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC53A6NM62 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC53A6NM62 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC20.3■□□□□ 0.84
LRRC53A6NM62 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC53A6NM62 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC53A6NM62 NIFKP9-201ENST00000419265 221 ntBASIC20.3■□□□□ 0.84
LRRC53A6NM62 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC53A6NM62 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.3■□□□□ 0.84
LRRC53A6NM62 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.3■□□□□ 0.84
LRRC53A6NM62 RN7SL471P-201ENST00000580476 299 ntBASIC20.3■□□□□ 0.84
LRRC53A6NM62 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC20.3■□□□□ 0.84
LRRC53A6NM62 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC53A6NM62 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.3■□□□□ 0.84
LRRC53A6NM62 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC53A6NM62 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC53A6NM62 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC53A6NM62 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRRC53A6NM62 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC20.3■□□□□ 0.84
LRRC53A6NM62 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
LRRC53A6NM62 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
LRRC53A6NM62 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC53A6NM62 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC53A6NM62 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC53A6NM62 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC53A6NM62 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC53A6NM62 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC53A6NM62 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC53A6NM62 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC53A6NM62 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC53A6NM62 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.29■□□□□ 0.84
LRRC53A6NM62 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
LRRC53A6NM62 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.29■□□□□ 0.84
LRRC53A6NM62 AC131212.4-201ENST00000623606 975 ntBASIC20.29■□□□□ 0.84
LRRC53A6NM62 AC073648.6-201ENST00000641589 218 ntBASIC20.29■□□□□ 0.84
LRRC53A6NM62 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC20.29■□□□□ 0.84
LRRC53A6NM62 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC20.29■□□□□ 0.84
LRRC53A6NM62 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC53A6NM62 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC53A6NM62 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
LRRC53A6NM62 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC20.29■□□□□ 0.84
LRRC53A6NM62 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
LRRC53A6NM62 AR-207ENST00000612010 3896 ntTSL 5 BASIC20.28■□□□□ 0.84
LRRC53A6NM62 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
LRRC53A6NM62 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
LRRC53A6NM62 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.28■□□□□ 0.84
LRRC53A6NM62 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC20.28■□□□□ 0.84
LRRC53A6NM62 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
LRRC53A6NM62 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.28■□□□□ 0.84
LRRC53A6NM62 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
LRRC53A6NM62 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LRRC53A6NM62 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LRRC53A6NM62 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LRRC53A6NM62 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LRRC53A6NM62 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LRRC53A6NM62 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LRRC53A6NM62 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LRRC53A6NM62 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
LRRC53A6NM62 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
LRRC53A6NM62 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.28■□□□□ 0.84
LRRC53A6NM62 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.28■□□□□ 0.84
LRRC53A6NM62 ADM-205ENST00000528544 586 ntTSL 2 BASIC20.28■□□□□ 0.84
LRRC53A6NM62 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.28■□□□□ 0.84
LRRC53A6NM62 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms