Protein–RNA interactions for Protein: A0A0B4J275

TRAV17, T-cell receptor alpha variable 17 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV17A0A0B4J275 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 MIR564-202ENST00000385049 94 ntBASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 AC012313.10-201ENST00000623509 926 ntBASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
TRAV17A0A0B4J275 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
TRAV17A0A0B4J275 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.02■□□□□ 0.31
TRAV17A0A0B4J275 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TRAV17A0A0B4J275 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TRAV17A0A0B4J275 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 AC026396.1-201ENST00000419388 421 ntBASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 CHCHD2P8-201ENST00000429873 447 ntBASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV17A0A0B4J275 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
TRAV17A0A0B4J275 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV17A0A0B4J275 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17■□□□□ 0.31
TRAV17A0A0B4J275 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
TRAV17A0A0B4J275 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
TRAV17A0A0B4J275 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV17A0A0B4J275 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRAV17A0A0B4J275 KRT8P32-201ENST00000512863 1461 ntBASIC17■□□□□ 0.31
TRAV17A0A0B4J275 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC17■□□□□ 0.31
TRAV17A0A0B4J275 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV17A0A0B4J275 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV17A0A0B4J275 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRAV17A0A0B4J275 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRAV17A0A0B4J275 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17■□□□□ 0.31
TRAV17A0A0B4J275 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRAV17A0A0B4J275 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17■□□□□ 0.31
TRAV17A0A0B4J275 TSPY22P-201ENST00000427496 604 ntBASIC17■□□□□ 0.31
TRAV17A0A0B4J275 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV17A0A0B4J275 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRAV17A0A0B4J275 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17■□□□□ 0.31
TRAV17A0A0B4J275 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
TRAV17A0A0B4J275 MIR3180-4-201ENST00000582223 153 ntBASIC17■□□□□ 0.31
TRAV17A0A0B4J275 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC17■□□□□ 0.31
TRAV17A0A0B4J275 AP002414.4-201ENST00000589764 1148 ntBASIC17■□□□□ 0.31
TRAV17A0A0B4J275 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17■□□□□ 0.31
TRAV17A0A0B4J275 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17■□□□□ 0.31
TRAV17A0A0B4J275 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms