Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC25.41■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC25.41■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 WWOX-216ENST00000569818 525 ntBASIC25.41■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC25.41■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC25.41■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC25.41■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC25.41■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC25.41■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 AC099343.3-201ENST00000605834 2503 ntBASIC25.4■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC25.4■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC25.4■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC25.4■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC25.4■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC25.4■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC25.4■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC25.4■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 CRYGFP-201ENST00000418459 633 ntBASIC25.4■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 AL137013.1-201ENST00000432946 1228 ntBASIC25.4■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 NME1-207ENST00000480143 964 ntTSL 2 BASIC25.4■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 Z85996.1-201ENST00000494644 937 ntBASIC25.4■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC25.4■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC25.4■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 AF186192.3-201ENST00000583427 947 ntBASIC25.4■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC25.4■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC25.4■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC25.4■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC25.4■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC25.4■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC25.39■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC25.39■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC25.39■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC25.39■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 CFL2-205ENST00000555765 632 ntTSL 2 BASIC25.39■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC25.39■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC25.39■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC25.39■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC25.39■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC25.39■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC25.39■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC25.39■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 AC104076.2-201ENST00000448912 469 ntBASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 AP002982.1-201ENST00000492365 877 ntBASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC25.38■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 CROCCP3-202ENST00000420820 1947 ntBASIC25.37■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC25.37■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC25.37■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
SENP3-EIF4A1A0A087X0R7 TERF1P1-201ENST00000311003 1181 ntBASIC25.37■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms