Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM4Q9C037 AC092865.7-201ENST00000641832 219 ntBASIC18.79■□□□□ 0.6
TRIM4Q9C037 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM4Q9C037 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM4Q9C037 AL135905.2-201ENST00000584934 1404 ntBASIC18.79■□□□□ 0.6
TRIM4Q9C037 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
TRIM4Q9C037 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM4Q9C037 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM4Q9C037 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM4Q9C037 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
TRIM4Q9C037 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM4Q9C037 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
TRIM4Q9C037 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM4Q9C037 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.79■□□□□ 0.6
TRIM4Q9C037 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.79■□□□□ 0.6
TRIM4Q9C037 AC011270.2-201ENST00000624293 2550 ntBASIC18.79■□□□□ 0.6
TRIM4Q9C037 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
TRIM4Q9C037 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM4Q9C037 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM4Q9C037 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM4Q9C037 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
TRIM4Q9C037 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM4Q9C037 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.78■□□□□ 0.6
TRIM4Q9C037 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM4Q9C037 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM4Q9C037 KRT8P17-201ENST00000453110 1448 ntBASIC18.78■□□□□ 0.6
TRIM4Q9C037 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM4Q9C037 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM4Q9C037 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM4Q9C037 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.78■□□□□ 0.6
TRIM4Q9C037 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM4Q9C037 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.78■□□□□ 0.6
TRIM4Q9C037 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.78■□□□□ 0.6
TRIM4Q9C037 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.78■□□□□ 0.6
TRIM4Q9C037 MTDHP1-201ENST00000605323 784 ntBASIC18.78■□□□□ 0.6
TRIM4Q9C037 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM4Q9C037 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM4Q9C037 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM4Q9C037 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
TRIM4Q9C037 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.78■□□□□ 0.6
TRIM4Q9C037 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM4Q9C037 TREX1-205ENST00000625293 1783 ntBASIC18.78■□□□□ 0.6
TRIM4Q9C037 AC139713.2-201ENST00000641328 2723 ntBASIC18.78■□□□□ 0.6
TRIM4Q9C037 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM4Q9C037 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM4Q9C037 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
TRIM4Q9C037 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM4Q9C037 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
TRIM4Q9C037 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM4Q9C037 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM4Q9C037 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM4Q9C037 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM4Q9C037 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.77■□□□□ 0.6
TRIM4Q9C037 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.77■□□□□ 0.6
TRIM4Q9C037 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM4Q9C037 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM4Q9C037 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM4Q9C037 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.77■□□□□ 0.6
TRIM4Q9C037 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
TRIM4Q9C037 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
TRIM4Q9C037 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM4Q9C037 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.77■□□□□ 0.6
TRIM4Q9C037 KRASP1-201ENST00000407852 552 ntBASIC18.77■□□□□ 0.6
TRIM4Q9C037 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM4Q9C037 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.77■□□□□ 0.6
TRIM4Q9C037 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.77■□□□□ 0.6
TRIM4Q9C037 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.77■□□□□ 0.6
TRIM4Q9C037 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM4Q9C037 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM4Q9C037 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM4Q9C037 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRIM4Q9C037 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRIM4Q9C037 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
TRIM4Q9C037 HTR7P1-202ENST00000624664 4411 ntBASIC18.77■□□□□ 0.59
TRIM4Q9C037 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.77■□□□□ 0.59
TRIM4Q9C037 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM4Q9C037 AC099398.1-201ENST00000567919 2776 ntBASIC18.76■□□□□ 0.59
TRIM4Q9C037 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.76■□□□□ 0.59
TRIM4Q9C037 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM4Q9C037 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM4Q9C037 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.76■□□□□ 0.59
TRIM4Q9C037 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM4Q9C037 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.76■□□□□ 0.59
TRIM4Q9C037 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM4Q9C037 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM4Q9C037 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
TRIM4Q9C037 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
TRIM4Q9C037 KRT18P57-201ENST00000443599 1254 ntBASIC18.76■□□□□ 0.59
TRIM4Q9C037 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.76■□□□□ 0.59
TRIM4Q9C037 MIR6786-201ENST00000616843 113 ntBASIC18.76■□□□□ 0.59
TRIM4Q9C037 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.76■□□□□ 0.59
TRIM4Q9C037 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM4Q9C037 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
TRIM4Q9C037 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM4Q9C037 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM4Q9C037 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.76■□□□□ 0.59
TRIM4Q9C037 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM4Q9C037 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM4Q9C037 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM4Q9C037 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms