Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
VPS39Q96JC1 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
VPS39Q96JC1 AC239809.2-201ENST00000415381 517 ntBASIC18.92■□□□□ 0.62
VPS39Q96JC1 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.92■□□□□ 0.62
VPS39Q96JC1 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.92■□□□□ 0.62
VPS39Q96JC1 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.92■□□□□ 0.62
VPS39Q96JC1 AL023875.1-201ENST00000640777 796 ntBASIC18.92■□□□□ 0.62
VPS39Q96JC1 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.92■□□□□ 0.62
VPS39Q96JC1 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
VPS39Q96JC1 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS39Q96JC1 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
VPS39Q96JC1 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
VPS39Q96JC1 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.92■□□□□ 0.62
VPS39Q96JC1 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS39Q96JC1 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS39Q96JC1 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS39Q96JC1 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS39Q96JC1 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS39Q96JC1 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS39Q96JC1 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS39Q96JC1 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS39Q96JC1 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS39Q96JC1 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS39Q96JC1 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS39Q96JC1 KRASP1-201ENST00000407852 552 ntBASIC18.91■□□□□ 0.62
VPS39Q96JC1 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
VPS39Q96JC1 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.91■□□□□ 0.62
VPS39Q96JC1 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.91■□□□□ 0.62
VPS39Q96JC1 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS39Q96JC1 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.91■□□□□ 0.62
VPS39Q96JC1 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.91■□□□□ 0.62
VPS39Q96JC1 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS39Q96JC1 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS39Q96JC1 AC007613.1-201ENST00000572811 2597 ntBASIC18.91■□□□□ 0.62
VPS39Q96JC1 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS39Q96JC1 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS39Q96JC1 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS39Q96JC1 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS39Q96JC1 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS39Q96JC1 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS39Q96JC1 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS39Q96JC1 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS39Q96JC1 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS39Q96JC1 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS39Q96JC1 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS39Q96JC1 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS39Q96JC1 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS39Q96JC1 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS39Q96JC1 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
VPS39Q96JC1 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS39Q96JC1 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS39Q96JC1 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS39Q96JC1 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS39Q96JC1 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS39Q96JC1 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS39Q96JC1 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS39Q96JC1 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS39Q96JC1 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS39Q96JC1 KRT16P5-201ENST00000455284 522 ntBASIC18.9■□□□□ 0.62
VPS39Q96JC1 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS39Q96JC1 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS39Q96JC1 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
VPS39Q96JC1 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS39Q96JC1 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS39Q96JC1 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS39Q96JC1 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.9■□□□□ 0.62
VPS39Q96JC1 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS39Q96JC1 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS39Q96JC1 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS39Q96JC1 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS39Q96JC1 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
VPS39Q96JC1 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
VPS39Q96JC1 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS39Q96JC1 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS39Q96JC1 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS39Q96JC1 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
VPS39Q96JC1 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
VPS39Q96JC1 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.89■□□□□ 0.62
VPS39Q96JC1 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.89■□□□□ 0.62
VPS39Q96JC1 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
VPS39Q96JC1 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.89■□□□□ 0.61
VPS39Q96JC1 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS39Q96JC1 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS39Q96JC1 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS39Q96JC1 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS39Q96JC1 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS39Q96JC1 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS39Q96JC1 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS39Q96JC1 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.89■□□□□ 0.61
VPS39Q96JC1 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS39Q96JC1 Z85996.1-201ENST00000494644 937 ntBASIC18.89■□□□□ 0.61
VPS39Q96JC1 KRT18P6-201ENST00000555540 1265 ntBASIC18.89■□□□□ 0.61
VPS39Q96JC1 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS39Q96JC1 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS39Q96JC1 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS39Q96JC1 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.89■□□□□ 0.61
VPS39Q96JC1 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
VPS39Q96JC1 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
VPS39Q96JC1 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS39Q96JC1 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 298 ms