Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
RFX4Q33E94 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
RFX4Q33E94 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX4Q33E94 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX4Q33E94 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX4Q33E94 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX4Q33E94 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX4Q33E94 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
RFX4Q33E94 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX4Q33E94 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.54■□□□□ 0.4
RFX4Q33E94 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC17.54■□□□□ 0.4
RFX4Q33E94 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC17.54■□□□□ 0.4
RFX4Q33E94 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX4Q33E94 MIR663A-201ENST00000385250 93 ntBASIC17.54■□□□□ 0.4
RFX4Q33E94 METTL15-202ENST00000403099 795 ntTSL 5 BASIC17.54■□□□□ 0.4
RFX4Q33E94 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC17.54■□□□□ 0.4
RFX4Q33E94 MIPEPP3-201ENST00000412105 444 ntBASIC17.54■□□□□ 0.4
RFX4Q33E94 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
RFX4Q33E94 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC17.54■□□□□ 0.4
RFX4Q33E94 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC17.54■□□□□ 0.4
RFX4Q33E94 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC17.54■□□□□ 0.4
RFX4Q33E94 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC17.54■□□□□ 0.4
RFX4Q33E94 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
RFX4Q33E94 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.54■□□□□ 0.4
RFX4Q33E94 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
RFX4Q33E94 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RFX4Q33E94 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX4Q33E94 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX4Q33E94 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.54■□□□□ 0.4
RFX4Q33E94 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX4Q33E94 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX4Q33E94 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX4Q33E94 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC17.54■□□□□ 0.4
RFX4Q33E94 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.54■□□□□ 0.4
RFX4Q33E94 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RFX4Q33E94 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RFX4Q33E94 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RFX4Q33E94 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
RFX4Q33E94 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX4Q33E94 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.54■□□□□ 0.4
RFX4Q33E94 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX4Q33E94 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RFX4Q33E94 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.53■□□□□ 0.4
RFX4Q33E94 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX4Q33E94 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RFX4Q33E94 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.53■□□□□ 0.4
RFX4Q33E94 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.53■□□□□ 0.4
RFX4Q33E94 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RFX4Q33E94 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX4Q33E94 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX4Q33E94 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC17.53■□□□□ 0.4
RFX4Q33E94 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
RFX4Q33E94 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX4Q33E94 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC17.53■□□□□ 0.4
RFX4Q33E94 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX4Q33E94 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX4Q33E94 GLI3-203ENST00000437480 451 ntTSL 2 BASIC17.53■□□□□ 0.4
RFX4Q33E94 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
RFX4Q33E94 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RFX4Q33E94 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC17.53■□□□□ 0.4
RFX4Q33E94 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC17.53■□□□□ 0.4
RFX4Q33E94 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC17.53■□□□□ 0.4
RFX4Q33E94 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC17.53■□□□□ 0.4
RFX4Q33E94 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC17.53■□□□□ 0.4
RFX4Q33E94 RAP2CP1-201ENST00000605103 478 ntBASIC17.53■□□□□ 0.4
RFX4Q33E94 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
RFX4Q33E94 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX4Q33E94 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
RFX4Q33E94 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.53■□□□□ 0.4
RFX4Q33E94 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
RFX4Q33E94 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX4Q33E94 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX4Q33E94 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX4Q33E94 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX4Q33E94 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX4Q33E94 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX4Q33E94 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
RFX4Q33E94 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RFX4Q33E94 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
RFX4Q33E94 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RFX4Q33E94 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
RFX4Q33E94 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
RFX4Q33E94 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
RFX4Q33E94 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RFX4Q33E94 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RFX4Q33E94 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RFX4Q33E94 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
RFX4Q33E94 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
RFX4Q33E94 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC17.52■□□□□ 0.4
RFX4Q33E94 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
RFX4Q33E94 DUSP5P2-201ENST00000426873 1033 ntBASIC17.52■□□□□ 0.4
RFX4Q33E94 CROCCP5-201ENST00000436658 830 ntBASIC17.52■□□□□ 0.4
RFX4Q33E94 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
RFX4Q33E94 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
RFX4Q33E94 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC17.52■□□□□ 0.4
RFX4Q33E94 VPS53-216ENST00000574029 585 ntTSL 4 BASIC17.52■□□□□ 0.4
RFX4Q33E94 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC17.52■□□□□ 0.4
RFX4Q33E94 AC006557.6-201ENST00000623071 864 ntBASIC17.52■□□□□ 0.4
RFX4Q33E94 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RFX4Q33E94 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms