Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH4P55283 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH4P55283 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH4P55283 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH4P55283 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH4P55283 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
CDH4P55283 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH4P55283 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CDH4P55283 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH4P55283 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CDH4P55283 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.27■□□□□ 0.68
CDH4P55283 AP000523.1-201ENST00000398242 1049 ntBASIC19.27■□□□□ 0.68
CDH4P55283 CD70-202ENST00000423145 881 ntTSL 2 BASIC19.27■□□□□ 0.68
CDH4P55283 AC009947.2-201ENST00000444014 672 ntBASIC19.27■□□□□ 0.68
CDH4P55283 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC19.27■□□□□ 0.68
CDH4P55283 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
CDH4P55283 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
CDH4P55283 COX11P1-201ENST00000489116 835 ntBASIC19.27■□□□□ 0.68
CDH4P55283 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC19.27■□□□□ 0.68
CDH4P55283 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.27■□□□□ 0.68
CDH4P55283 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.27■□□□□ 0.68
CDH4P55283 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.27■□□□□ 0.68
CDH4P55283 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC19.27■□□□□ 0.68
CDH4P55283 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.27■□□□□ 0.68
CDH4P55283 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH4P55283 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH4P55283 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CDH4P55283 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.27■□□□□ 0.68
CDH4P55283 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH4P55283 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CDH4P55283 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.27■□□□□ 0.68
CDH4P55283 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
CDH4P55283 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
CDH4P55283 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.27■□□□□ 0.67
CDH4P55283 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
CDH4P55283 AC008556.1-201ENST00000610908 2040 ntBASIC19.27■□□□□ 0.67
CDH4P55283 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
CDH4P55283 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CDH4P55283 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.27■□□□□ 0.67
CDH4P55283 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CDH4P55283 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC19.27■□□□□ 0.67
CDH4P55283 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.27■□□□□ 0.67
CDH4P55283 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH4P55283 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH4P55283 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDH4P55283 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH4P55283 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.26■□□□□ 0.67
CDH4P55283 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
CDH4P55283 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDH4P55283 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC19.26■□□□□ 0.67
CDH4P55283 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDH4P55283 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH4P55283 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDH4P55283 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC19.26■□□□□ 0.67
CDH4P55283 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
CDH4P55283 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
CDH4P55283 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.26■□□□□ 0.67
CDH4P55283 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
CDH4P55283 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CDH4P55283 AC104076.2-201ENST00000448912 469 ntBASIC19.26■□□□□ 0.67
CDH4P55283 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH4P55283 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.26■□□□□ 0.67
CDH4P55283 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.26■□□□□ 0.67
CDH4P55283 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH4P55283 AC006011.2-201ENST00000621313 1158 ntBASIC19.26■□□□□ 0.67
CDH4P55283 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH4P55283 AL031432.5-201ENST00000641059 760 ntBASIC19.26■□□□□ 0.67
CDH4P55283 AC083906.6-201ENST00000641366 219 ntBASIC19.26■□□□□ 0.67
CDH4P55283 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH4P55283 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH4P55283 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH4P55283 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC19.26■□□□□ 0.67
CDH4P55283 HEIH-201ENST00000623091 1652 ntBASIC19.26■□□□□ 0.67
CDH4P55283 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH4P55283 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH4P55283 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CDH4P55283 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC19.25■□□□□ 0.67
CDH4P55283 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH4P55283 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CDH4P55283 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDH4P55283 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.25■□□□□ 0.67
CDH4P55283 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.25■□□□□ 0.67
CDH4P55283 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.25■□□□□ 0.67
CDH4P55283 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH4P55283 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH4P55283 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH4P55283 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH4P55283 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDH4P55283 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.25■□□□□ 0.67
CDH4P55283 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CDH4P55283 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.25■□□□□ 0.67
CDH4P55283 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.25■□□□□ 0.67
CDH4P55283 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.25■□□□□ 0.67
CDH4P55283 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CDH4P55283 AC117947.1-201ENST00000427448 529 ntBASIC19.25■□□□□ 0.67
CDH4P55283 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.25■□□□□ 0.67
CDH4P55283 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC19.25■□□□□ 0.67
CDH4P55283 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.25■□□□□ 0.67
CDH4P55283 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
CDH4P55283 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms