Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFX1P22670 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RFX1P22670 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFX1P22670 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.53■□□□□ 0.88
RFX1P22670 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.53■□□□□ 0.88
RFX1P22670 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC20.53■□□□□ 0.88
RFX1P22670 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.53■□□□□ 0.88
RFX1P22670 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.53■□□□□ 0.88
RFX1P22670 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
RFX1P22670 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFX1P22670 AL031598.1-201ENST00000561511 1773 ntBASIC20.53■□□□□ 0.88
RFX1P22670 Z98044.1-201ENST00000632503 1764 ntBASIC20.53■□□□□ 0.88
RFX1P22670 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFX1P22670 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RFX1P22670 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RFX1P22670 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.53■□□□□ 0.88
RFX1P22670 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
RFX1P22670 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
RFX1P22670 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RFX1P22670 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFX1P22670 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.53■□□□□ 0.88
RFX1P22670 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RFX1P22670 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.88
RFX1P22670 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.52■□□□□ 0.88
RFX1P22670 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RFX1P22670 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFX1P22670 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFX1P22670 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFX1P22670 CYP2D8P-201ENST00000433633 1490 ntBASIC20.52■□□□□ 0.88
RFX1P22670 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFX1P22670 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFX1P22670 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFX1P22670 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC20.52■□□□□ 0.88
RFX1P22670 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFX1P22670 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
RFX1P22670 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC20.52■□□□□ 0.88
RFX1P22670 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.52■□□□□ 0.88
RFX1P22670 FITM1-202ENST00000559294 800 ntBASIC20.52■□□□□ 0.88
RFX1P22670 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RFX1P22670 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFX1P22670 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC20.52■□□□□ 0.88
RFX1P22670 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFX1P22670 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC20.52■□□□□ 0.88
RFX1P22670 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RFX1P22670 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.52■□□□□ 0.88
RFX1P22670 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
RFX1P22670 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
RFX1P22670 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
RFX1P22670 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
RFX1P22670 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFX1P22670 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.51■□□□□ 0.87
RFX1P22670 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFX1P22670 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC20.51■□□□□ 0.87
RFX1P22670 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFX1P22670 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
RFX1P22670 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFX1P22670 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFX1P22670 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFX1P22670 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.51■□□□□ 0.87
RFX1P22670 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.51■□□□□ 0.87
RFX1P22670 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.51■□□□□ 0.87
RFX1P22670 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.51■□□□□ 0.87
RFX1P22670 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFX1P22670 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
RFX1P22670 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RFX1P22670 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.51■□□□□ 0.87
RFX1P22670 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.51■□□□□ 0.87
RFX1P22670 AC131212.4-201ENST00000623606 975 ntBASIC20.51■□□□□ 0.87
RFX1P22670 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFX1P22670 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.51■□□□□ 0.87
RFX1P22670 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFX1P22670 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.51■□□□□ 0.87
RFX1P22670 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.51■□□□□ 0.87
RFX1P22670 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RFX1P22670 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RFX1P22670 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
RFX1P22670 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RFX1P22670 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RFX1P22670 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RFX1P22670 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RFX1P22670 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC20.5■□□□□ 0.87
RFX1P22670 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.5■□□□□ 0.87
RFX1P22670 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RFX1P22670 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC20.5■□□□□ 0.87
RFX1P22670 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.5■□□□□ 0.87
RFX1P22670 C2orf69P3-201ENST00000565542 1120 ntBASIC20.5■□□□□ 0.87
RFX1P22670 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RFX1P22670 AC010947.1-201ENST00000623454 693 ntBASIC20.5■□□□□ 0.87
RFX1P22670 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.5■□□□□ 0.87
RFX1P22670 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.5■□□□□ 0.87
RFX1P22670 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
RFX1P22670 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RFX1P22670 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
RFX1P22670 KRT16P1-201ENST00000399124 1418 ntBASIC20.5■□□□□ 0.87
RFX1P22670 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RFX1P22670 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
RFX1P22670 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RFX1P22670 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RFX1P22670 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RFX1P22670 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms