Protein–RNA interactions for Protein: O15353

FOXN1, Forkhead box protein N1, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN1O15353 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC22.52■■□□□ 1.2
FOXN1O15353 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
FOXN1O15353 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
FOXN1O15353 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
FOXN1O15353 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
FOXN1O15353 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
FOXN1O15353 COX10-202ENST00000429152 875 ntTSL 2 BASIC22.52■■□□□ 1.2
FOXN1O15353 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC22.52■■□□□ 1.2
FOXN1O15353 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC22.52■■□□□ 1.2
FOXN1O15353 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
FOXN1O15353 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC22.52■■□□□ 1.2
FOXN1O15353 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
FOXN1O15353 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
FOXN1O15353 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
FOXN1O15353 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
FOXN1O15353 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
FOXN1O15353 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
FOXN1O15353 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC22.52■■□□□ 1.2
FOXN1O15353 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
FOXN1O15353 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC22.52■■□□□ 1.19
FOXN1O15353 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
FOXN1O15353 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC22.51■■□□□ 1.19
FOXN1O15353 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC22.51■■□□□ 1.19
FOXN1O15353 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC22.51■■□□□ 1.19
FOXN1O15353 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC22.51■■□□□ 1.19
FOXN1O15353 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
FOXN1O15353 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
FOXN1O15353 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
FOXN1O15353 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC22.51■■□□□ 1.19
FOXN1O15353 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC22.51■■□□□ 1.19
FOXN1O15353 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
FOXN1O15353 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC22.51■■□□□ 1.19
FOXN1O15353 AP000867.3-201ENST00000524675 377 ntBASIC22.51■■□□□ 1.19
FOXN1O15353 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC22.51■■□□□ 1.19
FOXN1O15353 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
FOXN1O15353 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC22.51■■□□□ 1.19
FOXN1O15353 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC22.51■■□□□ 1.19
FOXN1O15353 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
FOXN1O15353 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC22.51■■□□□ 1.19
FOXN1O15353 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
FOXN1O15353 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
FOXN1O15353 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
FOXN1O15353 PMS2P7-201ENST00000506558 1336 ntBASIC22.51■■□□□ 1.19
FOXN1O15353 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC22.51■■□□□ 1.19
FOXN1O15353 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
FOXN1O15353 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
FOXN1O15353 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
FOXN1O15353 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
FOXN1O15353 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC22.5■■□□□ 1.19
FOXN1O15353 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC22.5■■□□□ 1.19
FOXN1O15353 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
FOXN1O15353 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC22.5■■□□□ 1.19
FOXN1O15353 AC116562.4-201ENST00000641316 2276 ntBASIC22.5■■□□□ 1.19
FOXN1O15353 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC22.5■■□□□ 1.19
FOXN1O15353 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
FOXN1O15353 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
FOXN1O15353 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
FOXN1O15353 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC22.5■■□□□ 1.19
FOXN1O15353 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
FOXN1O15353 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
FOXN1O15353 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
FOXN1O15353 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
FOXN1O15353 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
FOXN1O15353 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
FOXN1O15353 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
FOXN1O15353 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC22.5■■□□□ 1.19
FOXN1O15353 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
FOXN1O15353 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
FOXN1O15353 MOK-225ENST00000522867 1883 ntTSL 5 BASIC22.49■■□□□ 1.19
FOXN1O15353 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC22.49■■□□□ 1.19
FOXN1O15353 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
FOXN1O15353 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
FOXN1O15353 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC22.49■■□□□ 1.19
FOXN1O15353 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
FOXN1O15353 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
FOXN1O15353 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
FOXN1O15353 FABP5-202ENST00000396359 986 ntTSL 5 BASIC22.49■■□□□ 1.19
FOXN1O15353 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
FOXN1O15353 AC244107.1-201ENST00000442033 332 ntBASIC22.49■■□□□ 1.19
FOXN1O15353 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC22.49■■□□□ 1.19
FOXN1O15353 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
FOXN1O15353 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC22.49■■□□□ 1.19
FOXN1O15353 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC22.49■■□□□ 1.19
FOXN1O15353 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
FOXN1O15353 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC22.49■■□□□ 1.19
FOXN1O15353 AC140113.2-201ENST00000604370 208 ntBASIC22.49■■□□□ 1.19
FOXN1O15353 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
FOXN1O15353 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC22.49■■□□□ 1.19
FOXN1O15353 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
FOXN1O15353 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC22.49■■□□□ 1.19
FOXN1O15353 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
FOXN1O15353 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
FOXN1O15353 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
FOXN1O15353 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC22.49■■□□□ 1.19
FOXN1O15353 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC22.48■■□□□ 1.19
FOXN1O15353 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
FOXN1O15353 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
FOXN1O15353 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
FOXN1O15353 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
FOXN1O15353 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms