Protein–RNA interactions for Protein: A6NM62

LRRC53, Leucine-rich repeat-containing protein 53, humanhuman

Predictions only

Length 1,247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC53A6NM62 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC20.36■□□□□ 0.85
LRRC53A6NM62 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
LRRC53A6NM62 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
LRRC53A6NM62 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LRRC53A6NM62 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
LRRC53A6NM62 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LRRC53A6NM62 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
LRRC53A6NM62 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
LRRC53A6NM62 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
LRRC53A6NM62 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.35■□□□□ 0.85
LRRC53A6NM62 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
LRRC53A6NM62 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.35■□□□□ 0.85
LRRC53A6NM62 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.35■□□□□ 0.85
LRRC53A6NM62 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
LRRC53A6NM62 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC20.35■□□□□ 0.85
LRRC53A6NM62 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC20.35■□□□□ 0.85
LRRC53A6NM62 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.35■□□□□ 0.85
LRRC53A6NM62 AC026471.1-201ENST00000564629 3026 ntBASIC20.35■□□□□ 0.85
LRRC53A6NM62 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
LRRC53A6NM62 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.35■□□□□ 0.85
LRRC53A6NM62 AL499627.1-201ENST00000569373 2188 ntBASIC20.35■□□□□ 0.85
LRRC53A6NM62 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LRRC53A6NM62 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LRRC53A6NM62 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
LRRC53A6NM62 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
LRRC53A6NM62 AC073592.3-201ENST00000625118 1834 ntBASIC20.34■□□□□ 0.85
LRRC53A6NM62 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LRRC53A6NM62 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LRRC53A6NM62 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LRRC53A6NM62 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LRRC53A6NM62 MTMR9LP-203ENST00000426597 1545 ntBASIC20.34■□□□□ 0.85
LRRC53A6NM62 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
LRRC53A6NM62 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LRRC53A6NM62 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LRRC53A6NM62 ESRRAP1-201ENST00000400596 1257 ntBASIC20.34■□□□□ 0.85
LRRC53A6NM62 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.34■□□□□ 0.85
LRRC53A6NM62 KRT18P6-201ENST00000555540 1265 ntBASIC20.34■□□□□ 0.85
LRRC53A6NM62 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.34■□□□□ 0.85
LRRC53A6NM62 AL445675.2-201ENST00000620291 557 ntBASIC20.34■□□□□ 0.85
LRRC53A6NM62 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC20.34■□□□□ 0.85
LRRC53A6NM62 KATNBL1P6-202ENST00000562413 1466 ntBASIC20.34■□□□□ 0.85
LRRC53A6NM62 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LRRC53A6NM62 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
LRRC53A6NM62 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC20.34■□□□□ 0.85
LRRC53A6NM62 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LRRC53A6NM62 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LRRC53A6NM62 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LRRC53A6NM62 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LRRC53A6NM62 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LRRC53A6NM62 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.33■□□□□ 0.85
LRRC53A6NM62 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
LRRC53A6NM62 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LRRC53A6NM62 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.33■□□□□ 0.85
LRRC53A6NM62 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC20.33■□□□□ 0.85
LRRC53A6NM62 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
LRRC53A6NM62 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LRRC53A6NM62 NFYC-AS1-201ENST00000606277 1687 ntBASIC20.33■□□□□ 0.85
LRRC53A6NM62 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
LRRC53A6NM62 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LRRC53A6NM62 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LRRC53A6NM62 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
LRRC53A6NM62 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.33■□□□□ 0.85
LRRC53A6NM62 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.33■□□□□ 0.85
LRRC53A6NM62 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
LRRC53A6NM62 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC20.33■□□□□ 0.84
LRRC53A6NM62 AL133373.2-201ENST00000623187 2828 ntBASIC20.33■□□□□ 0.84
LRRC53A6NM62 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LRRC53A6NM62 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC20.33■□□□□ 0.84
LRRC53A6NM62 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
LRRC53A6NM62 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.84
LRRC53A6NM62 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
LRRC53A6NM62 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
LRRC53A6NM62 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LRRC53A6NM62 AC005332.8-201ENST00000622750 2735 ntBASIC20.33■□□□□ 0.84
LRRC53A6NM62 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC53A6NM62 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC53A6NM62 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
LRRC53A6NM62 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC20.32■□□□□ 0.84
LRRC53A6NM62 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC53A6NM62 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.32■□□□□ 0.84
LRRC53A6NM62 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
LRRC53A6NM62 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC20.32■□□□□ 0.84
LRRC53A6NM62 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC53A6NM62 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
LRRC53A6NM62 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC20.32■□□□□ 0.84
LRRC53A6NM62 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.32■□□□□ 0.84
LRRC53A6NM62 AC004980.1-204ENST00000429707 299 ntBASIC20.32■□□□□ 0.84
LRRC53A6NM62 AC133681.1-201ENST00000465482 601 ntBASIC20.32■□□□□ 0.84
LRRC53A6NM62 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.32■□□□□ 0.84
LRRC53A6NM62 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC53A6NM62 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
LRRC53A6NM62 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.32■□□□□ 0.84
LRRC53A6NM62 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.32■□□□□ 0.84
LRRC53A6NM62 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.32■□□□□ 0.84
LRRC53A6NM62 AC068587.9-201ENST00000641814 219 ntBASIC20.32■□□□□ 0.84
LRRC53A6NM62 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
LRRC53A6NM62 NOC2LP1-202ENST00000452600 2235 ntBASIC20.32■□□□□ 0.84
LRRC53A6NM62 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC53A6NM62 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LRRC53A6NM62 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms