Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC25.46■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC25.46■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC25.46■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC25.46■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 IPPK-202ENST00000375522 882 ntTSL 3 BASIC25.46■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 DUSP5P1-201ENST00000441325 1139 ntBASIC25.46■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC25.46■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC25.46■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC25.46■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC25.46■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC25.46■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC25.45■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC25.45■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
SENP3-EIF4A1A0A087X0R7 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC25.45■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC25.45■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC25.45■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 RBM42-202ENST00000586618 771 ntTSL 3 BASIC25.45■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 CR392000.1-201ENST00000624770 1228 ntBASIC25.45■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 AL358472.4-201ENST00000633140 710 ntBASIC25.45■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC25.45■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC25.45■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC25.45■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC25.44■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC25.44■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC25.44■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 AC008040.2-201ENST00000461049 708 ntBASIC25.44■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 AC023511.2-201ENST00000618803 211 ntBASIC25.44■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC25.44■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 CABP2-204ENST00000636477 941 ntTSL 5 BASIC25.44■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC25.44■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC25.44■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 USP49-202ENST00000373010 2446 ntTSL 5 BASIC25.43■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 GOLGA6L5P-202ENST00000515341 1828 ntBASIC25.43■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 FAM197Y1-201ENST00000421178 764 ntBASIC25.43■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC25.43■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC25.43■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC25.43■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC25.43■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC25.43■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC25.43■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC25.43■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC25.43■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC25.43■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC25.43■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC25.42■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 KRT8P41-201ENST00000533985 1514 ntBASIC25.42■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC25.42■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC25.42■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC25.42■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 AL160286.2-201ENST00000567150 934 ntBASIC25.42■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 DECR2-212ENST00000627716 352 ntTSL 2 BASIC25.42■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC25.42■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC25.42■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC25.42■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC25.42■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC25.41■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
SENP3-EIF4A1A0A087X0R7 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC25.41■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms