Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
USF3Q68DE3 PWWP2AP1-201ENST00000429776 2273 ntBASIC16.21■□□□□ 0.19
USF3Q68DE3 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
USF3Q68DE3 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
USF3Q68DE3 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
USF3Q68DE3 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
USF3Q68DE3 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
USF3Q68DE3 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
USF3Q68DE3 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC16.21■□□□□ 0.19
USF3Q68DE3 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
USF3Q68DE3 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
USF3Q68DE3 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC16.21■□□□□ 0.19
USF3Q68DE3 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
USF3Q68DE3 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
USF3Q68DE3 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.21■□□□□ 0.19
USF3Q68DE3 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.21■□□□□ 0.19
USF3Q68DE3 CKBP1-201ENST00000565489 1086 ntBASIC16.21■□□□□ 0.19
USF3Q68DE3 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
USF3Q68DE3 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
USF3Q68DE3 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC16.21■□□□□ 0.19
USF3Q68DE3 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
USF3Q68DE3 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC16.21■□□□□ 0.19
USF3Q68DE3 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
USF3Q68DE3 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
USF3Q68DE3 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC16.21■□□□□ 0.19
USF3Q68DE3 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC16.21■□□□□ 0.19
USF3Q68DE3 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC16.21■□□□□ 0.19
USF3Q68DE3 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC16.21■□□□□ 0.18
USF3Q68DE3 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
USF3Q68DE3 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC16.21■□□□□ 0.18
USF3Q68DE3 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC16.21■□□□□ 0.18
USF3Q68DE3 AL020996.1-203ENST00000536896 2307 ntBASIC16.21■□□□□ 0.18
USF3Q68DE3 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
USF3Q68DE3 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
USF3Q68DE3 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
USF3Q68DE3 TPM4P1-201ENST00000436100 807 ntBASIC16.21■□□□□ 0.18
USF3Q68DE3 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC16.21■□□□□ 0.18
USF3Q68DE3 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC16.21■□□□□ 0.18
USF3Q68DE3 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.21■□□□□ 0.18
USF3Q68DE3 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
USF3Q68DE3 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.18
USF3Q68DE3 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.18
USF3Q68DE3 AC093458.2-201ENST00000623150 629 ntBASIC16.21■□□□□ 0.18
USF3Q68DE3 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC16.21■□□□□ 0.18
USF3Q68DE3 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.18
USF3Q68DE3 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
USF3Q68DE3 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USF3Q68DE3 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
USF3Q68DE3 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC16.2■□□□□ 0.18
USF3Q68DE3 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
USF3Q68DE3 AC005332.7-201ENST00000614046 2005 ntBASIC16.2■□□□□ 0.18
USF3Q68DE3 MCC-208ENST00000514701 2855 ntTSL 2 BASIC16.2■□□□□ 0.18
USF3Q68DE3 Z82202.1-201ENST00000623446 1880 ntBASIC16.2■□□□□ 0.18
USF3Q68DE3 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
USF3Q68DE3 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USF3Q68DE3 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC16.2■□□□□ 0.18
USF3Q68DE3 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
USF3Q68DE3 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
USF3Q68DE3 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
USF3Q68DE3 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
USF3Q68DE3 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USF3Q68DE3 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USF3Q68DE3 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.2■□□□□ 0.18
USF3Q68DE3 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC16.2■□□□□ 0.18
USF3Q68DE3 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.2■□□□□ 0.18
USF3Q68DE3 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC16.2■□□□□ 0.18
USF3Q68DE3 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.2■□□□□ 0.18
USF3Q68DE3 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC16.2■□□□□ 0.18
USF3Q68DE3 AC098818.2-201ENST00000564925 2320 ntBASIC16.2■□□□□ 0.18
USF3Q68DE3 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USF3Q68DE3 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
USF3Q68DE3 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC16.2■□□□□ 0.18
USF3Q68DE3 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USF3Q68DE3 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USF3Q68DE3 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC16.2■□□□□ 0.18
USF3Q68DE3 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC16.2■□□□□ 0.18
USF3Q68DE3 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
USF3Q68DE3 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.19■□□□□ 0.18
USF3Q68DE3 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USF3Q68DE3 STARP1-201ENST00000397973 869 ntBASIC16.19■□□□□ 0.18
USF3Q68DE3 AL450487.1-201ENST00000426799 995 ntBASIC16.19■□□□□ 0.18
USF3Q68DE3 NEK4P2-201ENST00000580004 1012 ntBASIC16.19■□□□□ 0.18
USF3Q68DE3 NT5C-210ENST00000582160 860 ntTSL 2 BASIC16.19■□□□□ 0.18
USF3Q68DE3 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
USF3Q68DE3 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC16.19■□□□□ 0.18
USF3Q68DE3 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC16.19■□□□□ 0.18
USF3Q68DE3 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
USF3Q68DE3 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
USF3Q68DE3 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
USF3Q68DE3 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USF3Q68DE3 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC16.19■□□□□ 0.18
USF3Q68DE3 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC16.19■□□□□ 0.18
USF3Q68DE3 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USF3Q68DE3 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
USF3Q68DE3 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC16.19■□□□□ 0.18
USF3Q68DE3 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
USF3Q68DE3 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC16.19■□□□□ 0.18
USF3Q68DE3 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
USF3Q68DE3 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC16.19■□□□□ 0.18
USF3Q68DE3 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms