Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
RFX4Q33E94 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC17.58■□□□□ 0.41
RFX4Q33E94 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.58■□□□□ 0.41
RFX4Q33E94 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
RFX4Q33E94 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
RFX4Q33E94 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
RFX4Q33E94 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
RFX4Q33E94 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
RFX4Q33E94 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RFX4Q33E94 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
RFX4Q33E94 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC17.58■□□□□ 0.4
RFX4Q33E94 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC17.58■□□□□ 0.4
RFX4Q33E94 NME6-213ENST00000451657 871 ntTSL 2 BASIC17.58■□□□□ 0.4
RFX4Q33E94 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
RFX4Q33E94 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC17.58■□□□□ 0.4
RFX4Q33E94 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC17.58■□□□□ 0.4
RFX4Q33E94 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RFX4Q33E94 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.58■□□□□ 0.4
RFX4Q33E94 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
RFX4Q33E94 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RFX4Q33E94 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
RFX4Q33E94 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.58■□□□□ 0.4
RFX4Q33E94 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
RFX4Q33E94 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
RFX4Q33E94 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
RFX4Q33E94 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
RFX4Q33E94 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
RFX4Q33E94 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.57■□□□□ 0.4
RFX4Q33E94 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
RFX4Q33E94 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RFX4Q33E94 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
RFX4Q33E94 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
RFX4Q33E94 AC067852.2-201ENST00000590513 2313 ntBASIC17.57■□□□□ 0.4
RFX4Q33E94 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RFX4Q33E94 RER1-204ENST00000378518 522 ntTSL 3 BASIC17.57■□□□□ 0.4
RFX4Q33E94 PARL-206ENST00000435888 1098 ntTSL 5 BASIC17.57■□□□□ 0.4
RFX4Q33E94 AC026185.1-201ENST00000445748 174 ntBASIC17.57■□□□□ 0.4
RFX4Q33E94 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RFX4Q33E94 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.57■□□□□ 0.4
RFX4Q33E94 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
RFX4Q33E94 AC008764.6-201ENST00000595909 2069 ntBASIC17.57■□□□□ 0.4
RFX4Q33E94 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
RFX4Q33E94 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RFX4Q33E94 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
RFX4Q33E94 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
RFX4Q33E94 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RFX4Q33E94 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
RFX4Q33E94 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RFX4Q33E94 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.56■□□□□ 0.4
RFX4Q33E94 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RFX4Q33E94 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RFX4Q33E94 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
RFX4Q33E94 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RFX4Q33E94 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.56■□□□□ 0.4
RFX4Q33E94 GGT1-206ENST00000404223 952 ntTSL 2 BASIC17.56■□□□□ 0.4
RFX4Q33E94 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.56■□□□□ 0.4
RFX4Q33E94 OR2A1-AS1-201ENST00000462305 773 ntBASIC17.56■□□□□ 0.4
RFX4Q33E94 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC17.56■□□□□ 0.4
RFX4Q33E94 OAS3-207ENST00000551007 998 ntTSL 2 BASIC17.56■□□□□ 0.4
RFX4Q33E94 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC17.56■□□□□ 0.4
RFX4Q33E94 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
RFX4Q33E94 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RFX4Q33E94 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RFX4Q33E94 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RFX4Q33E94 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RFX4Q33E94 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RFX4Q33E94 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
RFX4Q33E94 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
RFX4Q33E94 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.56■□□□□ 0.4
RFX4Q33E94 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
RFX4Q33E94 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RFX4Q33E94 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
RFX4Q33E94 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
RFX4Q33E94 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RFX4Q33E94 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RFX4Q33E94 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RFX4Q33E94 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RFX4Q33E94 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RFX4Q33E94 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RFX4Q33E94 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
RFX4Q33E94 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
RFX4Q33E94 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC17.55■□□□□ 0.4
RFX4Q33E94 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
RFX4Q33E94 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC17.55■□□□□ 0.4
RFX4Q33E94 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
RFX4Q33E94 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC17.55■□□□□ 0.4
RFX4Q33E94 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC17.55■□□□□ 0.4
RFX4Q33E94 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC17.55■□□□□ 0.4
RFX4Q33E94 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.55■□□□□ 0.4
RFX4Q33E94 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC17.55■□□□□ 0.4
RFX4Q33E94 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC17.55■□□□□ 0.4
RFX4Q33E94 IKBKGP1-201ENST00000612193 1073 ntBASIC17.55■□□□□ 0.4
RFX4Q33E94 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RFX4Q33E94 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
RFX4Q33E94 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RFX4Q33E94 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
RFX4Q33E94 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RFX4Q33E94 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.55■□□□□ 0.4
RFX4Q33E94 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
RFX4Q33E94 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms