Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDX1P47902 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CDX1P47902 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CDX1P47902 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CDX1P47902 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
CDX1P47902 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CDX1P47902 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC15.41■□□□□ 0.06
CDX1P47902 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC15.4■□□□□ 0.06
CDX1P47902 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
CDX1P47902 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC15.4■□□□□ 0.06
CDX1P47902 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC15.4■□□□□ 0.06
CDX1P47902 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC15.4■□□□□ 0.06
CDX1P47902 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC15.4■□□□□ 0.06
CDX1P47902 CALM3-202ENST00000391918 702 ntTSL 2 BASIC15.4■□□□□ 0.06
CDX1P47902 PNN-205ENST00000556530 601 ntTSL 2 BASIC15.4■□□□□ 0.06
CDX1P47902 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC15.4■□□□□ 0.06
CDX1P47902 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC15.4■□□□□ 0.06
CDX1P47902 CABP2-204ENST00000636477 941 ntTSL 5 BASIC15.4■□□□□ 0.06
CDX1P47902 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
CDX1P47902 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC15.4■□□□□ 0.06
CDX1P47902 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
CDX1P47902 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 AC124283.5-201ENST00000624661 1809 ntBASIC15.4■□□□□ 0.06
CDX1P47902 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC15.4■□□□□ 0.06
CDX1P47902 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
CDX1P47902 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
CDX1P47902 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CDX1P47902 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CDX1P47902 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CDX1P47902 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDX1P47902 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDX1P47902 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDX1P47902 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDX1P47902 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC15.39■□□□□ 0.05
CDX1P47902 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDX1P47902 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC15.39■□□□□ 0.05
CDX1P47902 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC15.39■□□□□ 0.05
CDX1P47902 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC15.39■□□□□ 0.05
CDX1P47902 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDX1P47902 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC15.39■□□□□ 0.05
CDX1P47902 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDX1P47902 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDX1P47902 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CDX1P47902 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CDX1P47902 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CDX1P47902 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CDX1P47902 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC15.39■□□□□ 0.05
CDX1P47902 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC15.39■□□□□ 0.05
CDX1P47902 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC15.39■□□□□ 0.05
CDX1P47902 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC15.39■□□□□ 0.05
CDX1P47902 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC15.39■□□□□ 0.05
CDX1P47902 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC15.39■□□□□ 0.05
CDX1P47902 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC15.39■□□□□ 0.05
CDX1P47902 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC15.39■□□□□ 0.05
CDX1P47902 AP001412.1-201ENST00000608405 714 ntBASIC15.39■□□□□ 0.05
CDX1P47902 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDX1P47902 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC15.39■□□□□ 0.05
CDX1P47902 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDX1P47902 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDX1P47902 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDX1P47902 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CDX1P47902 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC15.39■□□□□ 0.05
CDX1P47902 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC15.39■□□□□ 0.05
CDX1P47902 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC15.38■□□□□ 0.05
CDX1P47902 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CDX1P47902 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CDX1P47902 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDX1P47902 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDX1P47902 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC15.38■□□□□ 0.05
CDX1P47902 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
CDX1P47902 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC15.38■□□□□ 0.05
CDX1P47902 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CDX1P47902 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms