Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
RPA3P35244 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RPA3P35244 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.1■□□□□ 0.65
RPA3P35244 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.1■□□□□ 0.65
RPA3P35244 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
RPA3P35244 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
RPA3P35244 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RPA3P35244 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.1■□□□□ 0.65
RPA3P35244 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
RPA3P35244 AC067852.2-201ENST00000590513 2313 ntBASIC19.1■□□□□ 0.65
RPA3P35244 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RPA3P35244 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC19.1■□□□□ 0.65
RPA3P35244 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
RPA3P35244 PRKY-204ENST00000533551 1019 ntBASIC19.1■□□□□ 0.65
RPA3P35244 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC19.1■□□□□ 0.65
RPA3P35244 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
RPA3P35244 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
RPA3P35244 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
RPA3P35244 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
RPA3P35244 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.1■□□□□ 0.65
RPA3P35244 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RPA3P35244 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RPA3P35244 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
RPA3P35244 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.1■□□□□ 0.65
RPA3P35244 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
RPA3P35244 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.09■□□□□ 0.65
RPA3P35244 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC19.09■□□□□ 0.65
RPA3P35244 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RPA3P35244 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.09■□□□□ 0.65
RPA3P35244 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
RPA3P35244 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
RPA3P35244 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC19.09■□□□□ 0.65
RPA3P35244 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
RPA3P35244 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
RPA3P35244 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.09■□□□□ 0.65
RPA3P35244 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
RPA3P35244 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
RPA3P35244 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
RPA3P35244 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RPA3P35244 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
RPA3P35244 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.09■□□□□ 0.65
RPA3P35244 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.09■□□□□ 0.65
RPA3P35244 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
RPA3P35244 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
RPA3P35244 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.09■□□□□ 0.65
RPA3P35244 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC19.09■□□□□ 0.65
RPA3P35244 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.09■□□□□ 0.65
RPA3P35244 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.09■□□□□ 0.65
RPA3P35244 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
RPA3P35244 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
RPA3P35244 AC073648.6-201ENST00000641589 218 ntBASIC19.09■□□□□ 0.65
RPA3P35244 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RPA3P35244 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RPA3P35244 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC19.09■□□□□ 0.65
RPA3P35244 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RPA3P35244 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
RPA3P35244 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
RPA3P35244 CD276-203ENST00000537340 2439 ntTSL 2 BASIC19.09■□□□□ 0.65
RPA3P35244 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
RPA3P35244 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
RPA3P35244 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
RPA3P35244 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
RPA3P35244 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
RPA3P35244 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
RPA3P35244 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
RPA3P35244 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
RPA3P35244 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.08■□□□□ 0.65
RPA3P35244 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
RPA3P35244 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.65
RPA3P35244 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
RPA3P35244 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.08■□□□□ 0.65
RPA3P35244 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
RPA3P35244 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.08■□□□□ 0.65
RPA3P35244 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
RPA3P35244 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.08■□□□□ 0.65
RPA3P35244 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
RPA3P35244 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
RPA3P35244 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
RPA3P35244 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
RPA3P35244 KRT18P29-201ENST00000397031 1267 ntBASIC19.08■□□□□ 0.64
RPA3P35244 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
RPA3P35244 AC128676.1-201ENST00000454392 318 ntBASIC19.08■□□□□ 0.64
RPA3P35244 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.08■□□□□ 0.64
RPA3P35244 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.08■□□□□ 0.64
RPA3P35244 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.08■□□□□ 0.64
RPA3P35244 AC233263.1-201ENST00000578059 224 ntBASIC19.08■□□□□ 0.64
RPA3P35244 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.08■□□□□ 0.64
RPA3P35244 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
RPA3P35244 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
RPA3P35244 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
RPA3P35244 PXK-206ENST00000463280 2825 ntTSL 2 BASIC19.08■□□□□ 0.64
RPA3P35244 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
RPA3P35244 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
RPA3P35244 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
RPA3P35244 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
RPA3P35244 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
RPA3P35244 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.08■□□□□ 0.64
RPA3P35244 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
RPA3P35244 ABALON-201ENST00000629058 1903 ntBASIC19.08■□□□□ 0.64
RPA3P35244 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms