Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC18.97■□□□□ 0.63
PTPN4P29074 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN4P29074 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.97■□□□□ 0.63
PTPN4P29074 AP001412.1-201ENST00000608405 714 ntBASIC18.97■□□□□ 0.63
PTPN4P29074 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
PTPN4P29074 AC073912.3-201ENST00000624414 853 ntBASIC18.97■□□□□ 0.63
PTPN4P29074 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN4P29074 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN4P29074 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN4P29074 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN4P29074 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
PTPN4P29074 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN4P29074 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
PTPN4P29074 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.97■□□□□ 0.63
PTPN4P29074 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.97■□□□□ 0.63
PTPN4P29074 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
PTPN4P29074 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN4P29074 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.97■□□□□ 0.63
PTPN4P29074 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.97■□□□□ 0.63
PTPN4P29074 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.97■□□□□ 0.63
PTPN4P29074 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
PTPN4P29074 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN4P29074 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN4P29074 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN4P29074 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN4P29074 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN4P29074 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.96■□□□□ 0.63
PTPN4P29074 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN4P29074 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN4P29074 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
PTPN4P29074 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.96■□□□□ 0.63
PTPN4P29074 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN4P29074 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN4P29074 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.96■□□□□ 0.63
PTPN4P29074 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.96■□□□□ 0.63
PTPN4P29074 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN4P29074 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN4P29074 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
PTPN4P29074 AL135905.2-201ENST00000584934 1404 ntBASIC18.96■□□□□ 0.63
PTPN4P29074 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
PTPN4P29074 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN4P29074 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN4P29074 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.96■□□□□ 0.63
PTPN4P29074 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
PTPN4P29074 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.96■□□□□ 0.63
PTPN4P29074 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
PTPN4P29074 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
PTPN4P29074 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN4P29074 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PTPN4P29074 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
PTPN4P29074 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN4P29074 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.95■□□□□ 0.62
PTPN4P29074 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN4P29074 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
PTPN4P29074 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN4P29074 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN4P29074 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN4P29074 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.95■□□□□ 0.62
PTPN4P29074 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
PTPN4P29074 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
PTPN4P29074 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.95■□□□□ 0.62
PTPN4P29074 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN4P29074 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN4P29074 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC18.95■□□□□ 0.62
PTPN4P29074 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN4P29074 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.95■□□□□ 0.62
PTPN4P29074 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN4P29074 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN4P29074 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN4P29074 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN4P29074 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN4P29074 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN4P29074 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PTPN4P29074 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN4P29074 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN4P29074 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN4P29074 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN4P29074 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN4P29074 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
PTPN4P29074 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
PTPN4P29074 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
PTPN4P29074 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN4P29074 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN4P29074 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN4P29074 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN4P29074 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN4P29074 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
PTPN4P29074 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.94■□□□□ 0.62
PTPN4P29074 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.94■□□□□ 0.62
PTPN4P29074 PRKY-204ENST00000533551 1019 ntBASIC18.94■□□□□ 0.62
PTPN4P29074 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN4P29074 AC141586.3-201ENST00000562166 1838 ntBASIC18.94■□□□□ 0.62
PTPN4P29074 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.94■□□□□ 0.62
PTPN4P29074 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.94■□□□□ 0.62
PTPN4P29074 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
PTPN4P29074 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
PTPN4P29074 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN4P29074 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PTPN4P29074 KRT17P2-201ENST00000300992 1314 ntBASIC18.94■□□□□ 0.62
PTPN4P29074 AIRN-201ENST00000601203 4374 ntBASIC18.94■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms