Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.82■□□□□ 0.6
MSH3P20585 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.82■□□□□ 0.6
MSH3P20585 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSH3P20585 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSH3P20585 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.81■□□□□ 0.6
MSH3P20585 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.81■□□□□ 0.6
MSH3P20585 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSH3P20585 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
MSH3P20585 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
MSH3P20585 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.81■□□□□ 0.6
MSH3P20585 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSH3P20585 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSH3P20585 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.81■□□□□ 0.6
MSH3P20585 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.81■□□□□ 0.6
MSH3P20585 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.81■□□□□ 0.6
MSH3P20585 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
MSH3P20585 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.81■□□□□ 0.6
MSH3P20585 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.81■□□□□ 0.6
MSH3P20585 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSH3P20585 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSH3P20585 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
MSH3P20585 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSH3P20585 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSH3P20585 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
MSH3P20585 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
MSH3P20585 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSH3P20585 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSH3P20585 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSH3P20585 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSH3P20585 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
MSH3P20585 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.8■□□□□ 0.6
MSH3P20585 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
MSH3P20585 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
MSH3P20585 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MSH3P20585 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
MSH3P20585 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MSH3P20585 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC18.8■□□□□ 0.6
MSH3P20585 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MSH3P20585 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC18.8■□□□□ 0.6
MSH3P20585 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
MSH3P20585 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
MSH3P20585 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MSH3P20585 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.8■□□□□ 0.6
MSH3P20585 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MSH3P20585 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.8■□□□□ 0.6
MSH3P20585 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
MSH3P20585 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MSH3P20585 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MSH3P20585 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSH3P20585 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
MSH3P20585 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSH3P20585 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSH3P20585 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSH3P20585 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.79■□□□□ 0.6
MSH3P20585 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSH3P20585 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSH3P20585 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSH3P20585 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MSH3P20585 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.79■□□□□ 0.6
MSH3P20585 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MSH3P20585 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.79■□□□□ 0.6
MSH3P20585 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MSH3P20585 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.79■□□□□ 0.6
MSH3P20585 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MSH3P20585 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
MSH3P20585 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSH3P20585 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSH3P20585 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.79■□□□□ 0.6
MSH3P20585 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MSH3P20585 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.79■□□□□ 0.6
MSH3P20585 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSH3P20585 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
MSH3P20585 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MSH3P20585 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSH3P20585 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.79■□□□□ 0.6
MSH3P20585 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MSH3P20585 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
MSH3P20585 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
MSH3P20585 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSH3P20585 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.78■□□□□ 0.6
MSH3P20585 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MSH3P20585 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
MSH3P20585 AC004408.2-201ENST00000623613 2777 ntBASIC18.78■□□□□ 0.6
MSH3P20585 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
MSH3P20585 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSH3P20585 AL161938.1-201ENST00000569833 2180 ntBASIC18.78■□□□□ 0.6
MSH3P20585 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
MSH3P20585 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSH3P20585 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSH3P20585 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MSH3P20585 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSH3P20585 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.78■□□□□ 0.6
MSH3P20585 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.78■□□□□ 0.6
MSH3P20585 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.78■□□□□ 0.6
MSH3P20585 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSH3P20585 C2orf69P3-201ENST00000565542 1120 ntBASIC18.78■□□□□ 0.6
MSH3P20585 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.78■□□□□ 0.6
MSH3P20585 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSH3P20585 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.78■□□□□ 0.6
MSH3P20585 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms