Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
LDLRP01130 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.26■□□□□ 0.51
LDLRP01130 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.25■□□□□ 0.51
LDLRP01130 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
LDLRP01130 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDLRP01130 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDLRP01130 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LDLRP01130 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.25■□□□□ 0.51
LDLRP01130 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDLRP01130 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.25■□□□□ 0.51
LDLRP01130 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LDLRP01130 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
LDLRP01130 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LDLRP01130 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.25■□□□□ 0.51
LDLRP01130 AL590326.2-201ENST00000625139 305 ntBASIC18.25■□□□□ 0.51
LDLRP01130 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC18.25■□□□□ 0.51
LDLRP01130 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LDLRP01130 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
LDLRP01130 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
LDLRP01130 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LDLRP01130 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LDLRP01130 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LDLRP01130 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
LDLRP01130 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.24■□□□□ 0.51
LDLRP01130 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
LDLRP01130 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.24■□□□□ 0.51
LDLRP01130 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
LDLRP01130 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LDLRP01130 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.24■□□□□ 0.51
LDLRP01130 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LDLRP01130 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.24■□□□□ 0.51
LDLRP01130 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LDLRP01130 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
LDLRP01130 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
LDLRP01130 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
LDLRP01130 KRASP1-201ENST00000407852 552 ntBASIC18.24■□□□□ 0.51
LDLRP01130 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
LDLRP01130 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.24■□□□□ 0.51
LDLRP01130 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.24■□□□□ 0.51
LDLRP01130 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LDLRP01130 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
LDLRP01130 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.24■□□□□ 0.51
LDLRP01130 C2orf69P4-201ENST00000565394 541 ntBASIC18.24■□□□□ 0.51
LDLRP01130 AL049597.2-201ENST00000565575 961 ntBASIC18.24■□□□□ 0.51
LDLRP01130 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LDLRP01130 AC105020.6-201ENST00000621523 1217 ntBASIC18.24■□□□□ 0.51
LDLRP01130 CYP21A1P-202ENST00000354927 1481 ntBASIC18.24■□□□□ 0.51
LDLRP01130 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
LDLRP01130 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LDLRP01130 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.24■□□□□ 0.51
LDLRP01130 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.24■□□□□ 0.51
LDLRP01130 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LDLRP01130 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LDLRP01130 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
LDLRP01130 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.23■□□□□ 0.51
LDLRP01130 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.23■□□□□ 0.51
LDLRP01130 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
LDLRP01130 PHGDH-210ENST00000641115 1638 ntBASIC18.23■□□□□ 0.51
LDLRP01130 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDLRP01130 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LDLRP01130 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.23■□□□□ 0.51
LDLRP01130 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDLRP01130 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.23■□□□□ 0.51
LDLRP01130 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDLRP01130 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDLRP01130 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDLRP01130 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.23■□□□□ 0.51
LDLRP01130 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDLRP01130 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDLRP01130 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.23■□□□□ 0.51
LDLRP01130 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.23■□□□□ 0.51
LDLRP01130 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.23■□□□□ 0.51
LDLRP01130 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.23■□□□□ 0.51
LDLRP01130 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LDLRP01130 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.23■□□□□ 0.51
LDLRP01130 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.23■□□□□ 0.51
LDLRP01130 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.23■□□□□ 0.51
LDLRP01130 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDLRP01130 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
LDLRP01130 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDLRP01130 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LDLRP01130 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LDLRP01130 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.23■□□□□ 0.51
LDLRP01130 WIZP1-201ENST00000531444 2299 ntBASIC18.23■□□□□ 0.51
LDLRP01130 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDLRP01130 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.22■□□□□ 0.51
LDLRP01130 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LDLRP01130 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.22■□□□□ 0.51
LDLRP01130 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDLRP01130 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.22■□□□□ 0.51
LDLRP01130 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.22■□□□□ 0.51
LDLRP01130 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDLRP01130 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC18.22■□□□□ 0.51
LDLRP01130 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
LDLRP01130 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDLRP01130 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDLRP01130 AC141586.3-201ENST00000562166 1838 ntBASIC18.22■□□□□ 0.51
LDLRP01130 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
LDLRP01130 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
LDLRP01130 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms