Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA1O95477 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA1O95477 AC020907.5-201ENST00000624372 1936 ntBASIC15.82■□□□□ 0.12
ABCA1O95477 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
ABCA1O95477 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA1O95477 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA1O95477 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA1O95477 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA1O95477 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
ABCA1O95477 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC15.82■□□□□ 0.12
ABCA1O95477 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA1O95477 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA1O95477 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC15.82■□□□□ 0.12
ABCA1O95477 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC15.82■□□□□ 0.12
ABCA1O95477 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC15.82■□□□□ 0.12
ABCA1O95477 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA1O95477 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC15.82■□□□□ 0.12
ABCA1O95477 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC15.82■□□□□ 0.12
ABCA1O95477 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
ABCA1O95477 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA1O95477 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA1O95477 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
ABCA1O95477 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA1O95477 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA1O95477 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
ABCA1O95477 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC15.82■□□□□ 0.12
ABCA1O95477 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC15.82■□□□□ 0.12
ABCA1O95477 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC15.82■□□□□ 0.12
ABCA1O95477 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
ABCA1O95477 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC15.82■□□□□ 0.12
ABCA1O95477 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
ABCA1O95477 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA1O95477 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA1O95477 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA1O95477 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA1O95477 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA1O95477 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA1O95477 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA1O95477 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
ABCA1O95477 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC15.82■□□□□ 0.12
ABCA1O95477 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
ABCA1O95477 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC15.82■□□□□ 0.12
ABCA1O95477 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC15.82■□□□□ 0.12
ABCA1O95477 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC15.82■□□□□ 0.12
ABCA1O95477 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ABCA1O95477 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC15.82■□□□□ 0.12
ABCA1O95477 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA1O95477 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC15.81■□□□□ 0.12
ABCA1O95477 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC15.81■□□□□ 0.12
ABCA1O95477 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC15.81■□□□□ 0.12
ABCA1O95477 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA1O95477 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA1O95477 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA1O95477 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC15.81■□□□□ 0.12
ABCA1O95477 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA1O95477 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
ABCA1O95477 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA1O95477 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA1O95477 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC15.81■□□□□ 0.12
ABCA1O95477 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC15.81■□□□□ 0.12
ABCA1O95477 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC15.81■□□□□ 0.12
ABCA1O95477 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC15.81■□□□□ 0.12
ABCA1O95477 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC15.81■□□□□ 0.12
ABCA1O95477 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC15.81■□□□□ 0.12
ABCA1O95477 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC15.81■□□□□ 0.12
ABCA1O95477 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA1O95477 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC15.81■□□□□ 0.12
ABCA1O95477 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC15.81■□□□□ 0.12
ABCA1O95477 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA1O95477 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA1O95477 TBC1D3P2-202ENST00000577902 1649 ntBASIC15.81■□□□□ 0.12
ABCA1O95477 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC15.81■□□□□ 0.12
ABCA1O95477 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA1O95477 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC15.81■□□□□ 0.12
ABCA1O95477 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA1O95477 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA1O95477 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
ABCA1O95477 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC15.81■□□□□ 0.12
ABCA1O95477 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA1O95477 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ABCA1O95477 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
ABCA1O95477 PHB2-202ENST00000440277 996 ntTSL 5 BASIC15.8■□□□□ 0.12
ABCA1O95477 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
ABCA1O95477 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ABCA1O95477 CALM1-205ENST00000553542 877 ntTSL 5 BASIC15.8■□□□□ 0.12
ABCA1O95477 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
ABCA1O95477 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ABCA1O95477 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC15.8■□□□□ 0.12
ABCA1O95477 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
ABCA1O95477 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ABCA1O95477 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ABCA1O95477 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC15.8■□□□□ 0.12
ABCA1O95477 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ABCA1O95477 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ABCA1O95477 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ABCA1O95477 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ABCA1O95477 STX6-204ENST00000542060 4809 ntTSL 2 BASIC15.8■□□□□ 0.12
ABCA1O95477 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ABCA1O95477 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ABCA1O95477 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms