Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.53■□□□□ 0.56
VPS4BO75351 AL590326.2-201ENST00000625139 305 ntBASIC18.53■□□□□ 0.56
VPS4BO75351 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS4BO75351 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS4BO75351 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
VPS4BO75351 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
VPS4BO75351 AL512353.2-201ENST00000448759 1962 ntBASIC18.53■□□□□ 0.56
VPS4BO75351 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.53■□□□□ 0.56
VPS4BO75351 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VPS4BO75351 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
VPS4BO75351 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VPS4BO75351 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS4BO75351 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS4BO75351 BCL2-203ENST00000589955 5011 ntBASIC18.52■□□□□ 0.56
VPS4BO75351 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VPS4BO75351 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS4BO75351 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS4BO75351 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.52■□□□□ 0.56
VPS4BO75351 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.52■□□□□ 0.56
VPS4BO75351 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS4BO75351 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS4BO75351 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS4BO75351 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS4BO75351 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
VPS4BO75351 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS4BO75351 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VPS4BO75351 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS4BO75351 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
VPS4BO75351 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS4BO75351 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
VPS4BO75351 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VPS4BO75351 KRT18P16-201ENST00000510337 1294 ntBASIC18.52■□□□□ 0.56
VPS4BO75351 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.52■□□□□ 0.56
VPS4BO75351 RARRES2P10-201ENST00000564312 460 ntBASIC18.52■□□□□ 0.56
VPS4BO75351 AL049597.2-201ENST00000565575 961 ntBASIC18.52■□□□□ 0.56
VPS4BO75351 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.52■□□□□ 0.56
VPS4BO75351 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.52■□□□□ 0.56
VPS4BO75351 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
VPS4BO75351 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
VPS4BO75351 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.52■□□□□ 0.56
VPS4BO75351 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
VPS4BO75351 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS4BO75351 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.52■□□□□ 0.56
VPS4BO75351 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS4BO75351 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
VPS4BO75351 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
VPS4BO75351 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.52■□□□□ 0.55
VPS4BO75351 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
VPS4BO75351 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
VPS4BO75351 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.55
VPS4BO75351 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.55
VPS4BO75351 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.55
VPS4BO75351 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
VPS4BO75351 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
VPS4BO75351 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS4BO75351 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS4BO75351 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS4BO75351 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.51■□□□□ 0.55
VPS4BO75351 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS4BO75351 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS4BO75351 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS4BO75351 AC009113.1-201ENST00000570267 2443 ntBASIC18.51■□□□□ 0.55
VPS4BO75351 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS4BO75351 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS4BO75351 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.51■□□□□ 0.55
VPS4BO75351 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
VPS4BO75351 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
VPS4BO75351 TUBB8P6-201ENST00000436895 1288 ntBASIC18.51■□□□□ 0.55
VPS4BO75351 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS4BO75351 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.51■□□□□ 0.55
VPS4BO75351 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.51■□□□□ 0.55
VPS4BO75351 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS4BO75351 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS4BO75351 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS4BO75351 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS4BO75351 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS4BO75351 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS4BO75351 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS4BO75351 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS4BO75351 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
VPS4BO75351 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.51■□□□□ 0.55
VPS4BO75351 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS4BO75351 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS4BO75351 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS4BO75351 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS4BO75351 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS4BO75351 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
VPS4BO75351 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS4BO75351 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS4BO75351 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS4BO75351 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
VPS4BO75351 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS4BO75351 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS4BO75351 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS4BO75351 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS4BO75351 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS4BO75351 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS4BO75351 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS4BO75351 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS4BO75351 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms