Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.62■□□□□ 0.57
TRIM13O60858 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM13O60858 SOX15-203ENST00000570788 1093 ntBASIC18.62■□□□□ 0.57
TRIM13O60858 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.62■□□□□ 0.57
TRIM13O60858 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.62■□□□□ 0.57
TRIM13O60858 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM13O60858 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM13O60858 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM13O60858 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM13O60858 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM13O60858 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM13O60858 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM13O60858 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM13O60858 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM13O60858 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM13O60858 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
TRIM13O60858 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.62■□□□□ 0.57
TRIM13O60858 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM13O60858 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM13O60858 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM13O60858 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM13O60858 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
TRIM13O60858 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.61■□□□□ 0.57
TRIM13O60858 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.61■□□□□ 0.57
TRIM13O60858 AC126763.1-201ENST00000552015 2118 ntBASIC18.61■□□□□ 0.57
TRIM13O60858 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM13O60858 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.61■□□□□ 0.57
TRIM13O60858 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.61■□□□□ 0.57
TRIM13O60858 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM13O60858 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM13O60858 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.61■□□□□ 0.57
TRIM13O60858 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM13O60858 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM13O60858 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.61■□□□□ 0.57
TRIM13O60858 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
TRIM13O60858 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM13O60858 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
TRIM13O60858 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM13O60858 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.61■□□□□ 0.57
TRIM13O60858 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
TRIM13O60858 NCF1B-203ENST00000435988 1254 ntBASIC18.61■□□□□ 0.57
TRIM13O60858 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.61■□□□□ 0.57
TRIM13O60858 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.61■□□□□ 0.57
TRIM13O60858 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM13O60858 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM13O60858 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM13O60858 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM13O60858 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM13O60858 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
TRIM13O60858 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.61■□□□□ 0.57
TRIM13O60858 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.61■□□□□ 0.57
TRIM13O60858 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM13O60858 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.61■□□□□ 0.57
TRIM13O60858 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
TRIM13O60858 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM13O60858 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM13O60858 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM13O60858 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM13O60858 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.6■□□□□ 0.57
TRIM13O60858 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
TRIM13O60858 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM13O60858 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM13O60858 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM13O60858 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.6■□□□□ 0.57
TRIM13O60858 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM13O60858 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.6■□□□□ 0.57
TRIM13O60858 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.6■□□□□ 0.57
TRIM13O60858 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM13O60858 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM13O60858 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM13O60858 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM13O60858 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
TRIM13O60858 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
TRIM13O60858 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM13O60858 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM13O60858 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM13O60858 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM13O60858 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM13O60858 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM13O60858 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.59■□□□□ 0.57
TRIM13O60858 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM13O60858 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
TRIM13O60858 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM13O60858 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM13O60858 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM13O60858 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM13O60858 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM13O60858 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM13O60858 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
TRIM13O60858 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM13O60858 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.59■□□□□ 0.57
TRIM13O60858 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
TRIM13O60858 PCDHB18P-201ENST00000524813 2368 ntBASIC18.59■□□□□ 0.57
TRIM13O60858 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.59■□□□□ 0.57
TRIM13O60858 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
TRIM13O60858 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.59■□□□□ 0.57
TRIM13O60858 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.59■□□□□ 0.57
TRIM13O60858 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.59■□□□□ 0.57
TRIM13O60858 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.59■□□□□ 0.57
TRIM13O60858 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms