Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 TSPY21P-201ENST00000433481 731 ntBASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 MARS-234ENST00000630571 216 ntTSL 5 BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 MARS-235ENST00000630803 183 ntTSL 3 BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC28BQ9BUN5 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.4■□□□□ 0.54
CCDC28BQ9BUN5 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CCDC28BQ9BUN5 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC28BQ9BUN5 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC28BQ9BUN5 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
CCDC28BQ9BUN5 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.4■□□□□ 0.54
CCDC28BQ9BUN5 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.4■□□□□ 0.54
CCDC28BQ9BUN5 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.4■□□□□ 0.54
CCDC28BQ9BUN5 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.4■□□□□ 0.54
CCDC28BQ9BUN5 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC28BQ9BUN5 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC28BQ9BUN5 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CCDC28BQ9BUN5 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.4■□□□□ 0.54
CCDC28BQ9BUN5 BX276092.2-201ENST00000417668 665 ntBASIC18.4■□□□□ 0.54
CCDC28BQ9BUN5 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CCDC28BQ9BUN5 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.4■□□□□ 0.54
CCDC28BQ9BUN5 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC28BQ9BUN5 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC28BQ9BUN5 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC28BQ9BUN5 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
CCDC28BQ9BUN5 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC28BQ9BUN5 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.4■□□□□ 0.54
CCDC28BQ9BUN5 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC28BQ9BUN5 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC28BQ9BUN5 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC28BQ9BUN5 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC28BQ9BUN5 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC28BQ9BUN5 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC28BQ9BUN5 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC28BQ9BUN5 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC28BQ9BUN5 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.54
CCDC28BQ9BUN5 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC28BQ9BUN5 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC28BQ9BUN5 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC28BQ9BUN5 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC28BQ9BUN5 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.39■□□□□ 0.53
CCDC28BQ9BUN5 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC28BQ9BUN5 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC28BQ9BUN5 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC28BQ9BUN5 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.39■□□□□ 0.53
CCDC28BQ9BUN5 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.39■□□□□ 0.53
CCDC28BQ9BUN5 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.39■□□□□ 0.53
CCDC28BQ9BUN5 PHB2-213ENST00000546111 858 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC28BQ9BUN5 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.39■□□□□ 0.53
CCDC28BQ9BUN5 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC28BQ9BUN5 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CCDC28BQ9BUN5 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC28BQ9BUN5 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC28BQ9BUN5 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
CCDC28BQ9BUN5 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
CCDC28BQ9BUN5 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CCDC28BQ9BUN5 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC28BQ9BUN5 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 AC009053.2-201ENST00000563701 2365 ntBASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC28BQ9BUN5 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms